Bacillus sp. SD-4: LCG60_00130
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Entry
LCG60_00130 CDS
T10885
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
basd Bacillus sp. SD-4
Pathway
basd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
basd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCG60_00130 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
basd03019
]
LCG60_00130 (pnp)
03016 Transfer RNA biogenesis [BR:
basd03016
]
LCG60_00130 (pnp)
Enzymes [BR:
basd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LCG60_00130 (pnp)
Messenger RNA biogenesis [BR:
basd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LCG60_00130 (pnp)
Transfer RNA biogenesis [BR:
basd03016
]
Prokaryotic type
tRNA degradation factors
LCG60_00130 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
SPATA25
KorB
PCB_OB
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
UBR30357
LinkDB
All DBs
Position
complement(19551..21689)
Genome browser
AA seq
712 aa
AA seq
DB search
MSQEKQVFSIDLAGRQLTVETGQLAKQANGAVLVRYGDTAVLSTATASKEAKNVDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVVSIVMSV
DQDCSSEMAAMLGSSLALSISDIPFEGPIAGATVGRINGEFVINPTVEQQEQSDIHLVVA
GTKDAINMVEAGADQVPEETMLEAIMFGHDEIKRLIAFQEEIVQAVGKEKSEVKLYEVDA
DLNQAVREMAEKDMHSAIQVHEKHAREDAINEVKKRVIEHYEAQEADADTLGQVNEILYK
IVKEEVRRLITVEKIRPDGRKGDEIRPLASEVGILSRTHGSGLFTRGQTQALSICTLGAL
GDVQILDGLGVEESKRFMHHYNFPSFSVGETRPMRGPGRREIGHGALGERALEPVIPSEK
DFPYTVRLVSEVLESNGSTSQASICGSTLAMMDAGVPLKAPVAGIAMGLVKTGEHYTILS
DIQGMEDHLGDMDFKVAGTAHGVTALQMDIKIDGLSREILEEALQQAKVGRVHILNHMLS
VIAEPRTELSAYAPKIITMTINPDKIRDVIGPSGKQINKIIEETGVKIDIEQDGTVFISS
INQEMNDKAKKIIEDIVREVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERV
GKVEDVVKIGDVITVKVIEIDKQGRVNLSRKVLLKEEQEKEAAKEENKQEQQ
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaagaaaagcaagtcttctcgatagatttagctggtcgccagctaacagttgaa
acaggtcagcttgcaaagcaagcgaacggagcagtattagtaagatatggcgatacagcg
gttctatctacagcaactgcatcaaaagaagcaaaaaatgtagatttcttcccacttaca
gtaaactatgaagagcgtttatatgcagtcggaaaaattcctggcggtttcattaaacgt
gaaggtcgtccaagtgaaaaagcaattttggcaagtcgtttaatcgaccgtccaattcgt
ccgcttttcgctgatggtttccgtaacgaagtacaagttgtcagcatcgtaatgagtgtt
gatcaggattgttcttctgaaatggcagctatgcttggttcttcattagcgttatcgatt
tcagatattccatttgaaggtccaattgcgggtgcaacagttggtcgtattaacggcgaa
ttcgttatcaacccaacagtagaacagcaagaacaaagtgacattcaccttgttgtagct
ggtacgaaagatgcaattaacatggttgaagcaggagcagatcaagtgcctgaggaaaca
atgttagaagcaattatgtttggtcatgacgaaattaaacgtctaattgcattccaagaa
gagattgtacaagctgtaggtaaagagaaatcagaagtgaaactttatgaagttgacgct
gatcttaaccaagctgtacgtgaaatggctgagaaggatatgcattctgcaattcaagta
catgagaaacatgcacgtgaagatgcaattaacgaagtgaaaaagcgtgtaattgagcat
tacgaagcgcaggaagctgacgctgatactttaggacaagtaaatgagattttatataaa
attgtaaaagaagaagtacgtcgtcttattacagttgaaaaaatccgcccagatggccgt
aaaggtgacgaaatccgtccattagcatcagaggttggcattttatctcgtacacacggt
tctggtttgttcactcgtggacaaacacaagcattaagtatttgtacattaggtgcatta
ggcgatgtgcaaattttagacggtcttggtgtagaagaatcaaaacgctttatgcaccat
tacaatttcccatcatttagtgttggtgaaacaagacctatgcgtggaccaggtcgtcgt
gaaatcggtcacggtgcactaggagaacgtgctcttgaacctgtaattccatctgaaaaa
gacttcccatacacagtacgtcttgtgtctgaagtattagaatcaaatggttctacttca
caagcaagtatttgtggtagtactttagcaatgatggatgctggtgttccacttaaagct
ccagttgcaggtattgcaatggggctagttaaaactggtgagcattacacaattttatct
gatattcaaggtatggaagatcatttaggtgatatggactttaaagtagcaggtacagca
catggtgtaactgcattacaaatggacattaaaatcgatggtctatctcgtgaaatttta
gaagaggcattacaacaagcgaaagttggtcgtgtgcacattctaaatcatatgttatct
gttattgcagagccacgcactgaattatcagcgtacgctccaaagattattacaatgaca
attaacccagataaaatccgtgacgttatcggaccaagcggtaaacaaatcaataaaatt
attgaagaaactggcgttaaaattgacatcgagcaagatggtacagtattcatttcttca
ataaatcaagaaatgaacgacaaagctaagaaaattatcgaagatatcgttcgcgaagta
caagtaggtgaaatctacgaaggaaaagtgaaacgtgttgagaaattcggtgctttcgtt
gaattattcagcggtaaagatggattagttcacatttctgaacttgcacttgagcgtgta
ggtaaagtagaagacgttgtgaaaatcggtgatgtaattacagttaaagttatcgagatt
gacaagcaaggtcgcgtgaatctatctagaaaagtattgctaaaagaagagcaagaaaaa
gaagctgctaaagaagaaaacaaacaagagcagcaataa
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