Bifidobacterium asteroides: BAST_0408
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Entry
BAST_0408 CDS
T02271
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bast
Bifidobacterium asteroides
Pathway
bast03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bast00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BAST_0408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bast03021
]
BAST_0408
03400 DNA repair and recombination proteins [BR:
bast03400
]
BAST_0408
Enzymes [BR:
bast01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BAST_0408
Transcription machinery [BR:
bast03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BAST_0408
DNA repair and recombination proteins [BR:
bast03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BAST_0408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
FadA
Pentapeptide
STAT_alpha
Motif
Other DBs
NCBI-ProteinID:
AFU71002
LinkDB
All DBs
Position
538252..542412
Genome browser
AA seq
1386 aa
AA seq
DB search
MLDVNAFDKLRIGLATADDIRGWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTKVDEEQRHKDLPDLQDEFDNEINQLEKKRDLEIDKRAKKLEED
LAELEKTDEVKGSMKARLRNGAERDMTAIRKRYDDQIQRITAVFDRFKTLKPGDMEGDVD
LWREMQDRYGDYFEGCMGAEAIKKRLQDFDLEGAAKELRHEIDTGSGQRKARALKRLKVV
SAFLNTGNKPEAMVLDVVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLADMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DPEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMLASDNILKPADGHTVTMPSQDMILGLYYLTTVVDGAKGQG
RIFSSLAEARMALDLGEIDMQAKILLRVPADFVMPKNWEPGDLKVVDPEPGSPDVVKEEV
FKDGSRLFATNYGRVLFNRTLPVDYPFINEQVPKGKLSGIVDDIATRYSTAQVAATLDAL
KDLGFTRAQWSGVTMAFSDIVVPPERSEIVNEYQGQAAKVNSQYDMGLLTDEERRQELIN
LWTECTDKVADAMQEHFTPDNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPV
KSNYHDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTMRG
LTMKVAERDEQGNLVLVKAADGGPYSRLLAADVIDPKDGKTVLYKRGDALSMDVLRDMVA
HGVEEVKARSVLTCESTRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFPGTVKVEDTDRGRQVTLTPDDTS
VEALTYPVTRRAPMMVKDGQHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVNEVHTVYR
SQGVDIHDKHIEVIVHQMLRRVTVIDSGDTDLLPGELVDQAKFKAANMKAVKAGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALNQKVDDLKGLKENVIIGKLIPAGTG
LARYRNATVEPDKAIRDTIYPNFGLGGGDVDLSDADLNDVDFSNIDFGDLKLGDDFNPDD
FLNDQGGQSHLDTPNVQDPSAAAGDQTAATGAGSSDAADGSGSDQKPSQQPGSATFSSSE
DQHSNQ
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaatgcatttgacaaactgagaatcggactggccacggccgacgacatc
cgcggctggagctatggcgaggtcaagaaacccgaaaccatcaactaccgtaccttgaag
cccgagaaggacggcctgttcggcgagcagatcttcggacccacccgtgactgggaatgc
gcctgcggcaagtacaagcgcgtgcgcttcaaggggatcgtctgcgagcgctgcggcgtg
gaggtcacccgctcccgcgtccgccgcgagcgtatgggccacatcgagctggccgccccc
gttacccacatctggttcttcaagggcgtgccctcccggctgggatacctgctggacatc
gcgcccaaggacctggagaaggtcatctacttcgcggcctacatggtcaccaaggtggat
gaggagcagcgccacaaggacctgcccgacctgcaggacgagttcgacaacgagatcaac
cagctggagaagaagcgcgacctggagatcgacaagcgcgccaagaagctggaagaggac
ctggccgagctggagaagaccgacgaggtcaagggttccatgaaggcacgtctgcgcaac
ggggccgagcgggacatgaccgccatccgcaagcgctacgatgaccagattcagaggatc
accgccgtcttcgaccgcttcaagaccctgaagcccggcgacatggagggtgacgtggat
ctgtggcgggagatgcaggaccgctacggtgactacttcgagggctgcatgggcgccgag
gccatcaagaagcgcctgcaggacttcgacctggaaggtgccgccaaggagctccgtcac
gagatcgacaccggctccggccagcgcaaggcccgtgccctcaagcggctcaaggtggtc
tccgccttcctgaacaccggcaacaagcccgaggccatggtcctggacgtcgtcccggtc
atcccgcccgacctgcgccccatggtgcagctggacggcggccgcttcgccacctccgac
ctgaacgacctctatcggcgcgtcatcaaccgcaacaacaggctcaagcgcctgatcgag
ctgggcgcccccgagatcatgctcaacaacgagaagcgtatgctccaggaggccgtggac
tccctcttcgacaacggccgccgtggtcgccccgtcaccggagcctccaaccgccccctg
aagtccctggcggatatgctcaagggcaagcagggccgcttccgtcagaacctgctgggc
aagcgtgtggactactccggccgttccgtgatcgtggtcgggccctccctgcgcatgcac
cagtgcggcctgcccaagcccatggccctggagctcttcaagcccttcgtcatcaagcgg
ctggtggacctcaactacgcgcagaacatgaagagcgccaagcggctggtcgaccgcggc
gacccagaggtctggggcgtgttggaggaggtcatctccgagcatcccgtcctgctcaac
cgtgcgcctacgctgcaccgtctgggcatccaggccttcgagcccatcctggtcgagggc
aaggccatccacctgcccccgctggcctgcgcggccttcaacgccgacttcgacggcgac
cagatggcggtccacctgcccctgtcggcagaggcccaggctgaggcccgctcgctcatg
ctggcctccgacaacatcctcaagcccgccgacggccacacggtaaccatgccctcccag
gatatgattctgggtctgtactacctgaccaccgtggttgacggcgccaagggccagggc
cggatcttctccagcctggccgaggcccggatggccctggacctgggtgagatcgacatg
caggccaagatcctgcttcgggtgcccgctgacttcgtcatgcccaagaactgggagccc
ggcgacctcaaggtcgtcgaccccgagcccggcagccccgacgtggtcaaggaggaggtc
ttcaaggacggctccaggctcttcgccaccaactacgggcgggtcctgttcaaccggacg
ctgcctgtggactaccccttcatcaacgagcaggtgcccaagggcaagctgtccggcatc
gtggacgacatcgccacccggtactcgaccgcccaggtcgcggccaccctggatgccttg
aaggatctgggcttcacccgggcccagtggtccggcgtgaccatggccttctccgacatt
gtggtgccgcccgagcgcagcgagatcgtcaacgagtaccaggggcaggccgccaaggtc
aactcccagtacgacatgggtctgctgaccgacgaggagcgccgtcaggagctgatcaac
ctgtggaccgagtgcaccgacaaggtggctgacgccatgcaggagcacttcactccggac
aacaacgtgaacatcatggtccagtccggggcacgaggcaactggatgcagattcgccag
atcgccggtatgcgaggcctggtggccaaccccaagggcgagatcatccctcgaccggtc
aagtccaactatcacgacggcctgtcggtgctggagtacttcatctcccagcacggcgcc
cgcaagggtctggccgacaccgcactgcgcaccgccgagtcgggctacctgacccgtcgt
ctggtcgatgtctcccaggatgtgattgtgcgcgaggaggactgcggcaccatgcgcggt
ctgacaatgaaggtggccgaacgcgacgagcagggcaacctggtcctggtcaaggccgcc
gacggcggaccctactccaggctcctggccgccgatgtcatcgaccccaaggacggcaag
accgtgctctacaagcgcggtgacgccctgtccatggacgtgcttcgcgacatggtcgcc
cacggcgtggaggaggtcaaggcccgctcggtcctgacctgcgagtccacccgcggggtt
tgcgccaagtgctacggctggtccctggccaccaacaagctggtggatgtgggtgaggcc
gtgggcattgtggccgcccagtccatcggcgagcctggcacccagctgacgctgcgttcc
ttccactccggcggcgtggcttcggcctccgacatcacccagggtcttccccgtgtcacc
gagctcttcgaggcccgtacccccaagggcgaggctcccatcgcggagttccccggcacc
gtcaaggtggaggacaccgatcgcggtcgtcaggtgaccctaaccccggacgacacctct
gtggaggcgctgacctacccggtcacccgccgtgcgcccatgatggtcaaggacggacag
cacgtcgaggccggcacccagctgatcgagggctccgtggatcccaagaagatcctgcgc
atcctcggcccgcgcgccgcccaggtgaacatcgtcaacgaggtgcacacggtctaccgc
tcccagggcgttgacatccacgacaagcacatcgaagtcatcgtccaccagatgctccgc
cgcgtcacggtcatcgattcgggcgacaccgacctgctgcccggcgagctggtcgaccag
gccaagttcaaggccgccaacatgaaggccgtcaaggccggtggcaagccggccgcggga
cgtcctgagctcatgggcatcaccaaggcctccctggccaccgactcctggctgtcggcc
gcctccttccaggagacgacccgcgtgctcaccgaggccgccctgaaccagaaggtcgac
gacctgaagggcctcaaggagaacgtgatcatcggcaagctgattccggccggcaccggc
ctggccaggtaccgcaacgccaccgttgagcccgacaaggccatccgcgacaccatctat
cccaacttcggtctgggcggcggcgacgtggatctgagcgacgccgacctgaacgatgtg
gacttctccaacatcgacttcggggacctgaagctgggcgacgacttcaacccggacgac
ttcctcaacgaccagggcggccagagccatctggacacccccaacgtgcaggatccgtca
gctgcggccggcgatcagacggctgccacgggcgcgggatcctcggatgcagccgatggc
agtggctccgatcagaagccgtcccagcagcctggttcggccaccttctcctcttcggag
gatcagcactccaaccagtga
DBGET
integrated database retrieval system
