Bifidobacterium asteroides: BAST_0420
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Entry
BAST_0420 CDS
T02271
Name
(GenBank) metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bast
Bifidobacterium asteroides
Pathway
bast03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bast00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAST_0420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bast03019
]
BAST_0420
Messenger RNA biogenesis [BR:
bast03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAST_0420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Cuticle_1
Motif
Other DBs
NCBI-ProteinID:
AFU71014
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Position
567840..569714
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AA seq
624 aa
AA seq
DB search
MIETQVSMARKQEESNTTGKSRNRRSSSKNGKQGSGRSRAESRSRRNGAIARGKGTQTEQ
HLVAPPKYRKGSMRIVPLGGLGEIGRNMNVIEYNGHILLIDCGVLFPEEEQPGVDLILPD
FSYIKDKLDQVDALVLTHGHEDHIGGVPYLLKLRPDIPLIGSKLTLGFVDAKCEEHHLKP
TEVEVKGRDKLKVGPFNLEFVAVTHSIPDALAVSVRTPAGHIIDTGDMKIDPLPLDHRLT
DLREFAKLGESGVDLLMVDSTNAEVPGFVKPEISIAPALDKAFAEAQRKIIVASFSSHVH
RVQQVVDAAHKFGRKVVFAGRSMVRNMSIASDLGYLHLPEDTVVDLKDAHSIPDEKIVYM
CTGSQGEPMAALGRIADGTHRDITINEFDTVILASSLIPGNEHEVYKVINKLVRLGAKVV
NRDNAAIHVSGHSDEGELLHFYNIVQPKCAMPIHGENRHLVANGLIAVKTGVDPQNVVLA
EDGDVVDLYHGQAAVVGSVPCGYVYVDGDSVGQLTDDELEERRILGTEGFVSAFAVVDTE
TSKVVSGPKLYLNAVAEDESEFKSINAQIVDQLEDAMSKGTTGTYQLQQMMRRTLGGWIS
RKLHRRPMIVPVVADIATDVQPQD
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaacacaagtgagtatggcaagaaaacaagaagaatcaaacacgaccggcaag
agcagaaatcgtcggtcctcctccaagaacggcaagcaggggtcaggcaggtcccgggcc
gaatcccgtagccgccgcaacggcgccatcgcccgcggcaagggcacccagaccgagcag
catctggtggcgccccccaagtaccgcaagggttccatgcgtatcgtccccctgggtggc
ctgggcgagatcggccgcaacatgaatgtgatcgagtacaacggccacatcctgctgatc
gactgcggcgtgctcttccccgaggaggaacagccgggcgtggatttgatcctgcctgac
ttcagctacatcaaggacaagctggaccaggtggatgccctggttctgacccacgggcat
gaggatcatatcggcggcgtgccctacctgctcaagctgcgcccggacatccccctgatc
ggctccaagctgaccctcggattcgtcgatgccaagtgtgaggagcaccatctcaagccc
accgaggttgaggtcaagggccgcgacaagctcaaggtaggcccattcaacctggaattc
gtggcagtcacccactccattcctgacgccctggccgtctccgtgcgcaccccggcaggc
cacatcatcgacacaggtgacatgaaaatcgacccgctgcccctggatcaccgcctgacc
gacctgcgcgagttcgccaaattgggggagtccggcgtggatctgctcatggtcgattcc
accaacgccgaggtccctggcttcgtcaagcccgagatctccatcgcccccgccctggac
aaggccttcgccgaggcccagcgcaagatcatcgtggcctccttctccagccacgtccac
cgggtgcagcaggtggtcgacgccgcccacaagttcggccgcaaggtggtcttcgccggc
cggtccatggtccgcaacatgtccatcgcctccgacctgggctacctgcacctgcctgag
gacaccgtggtcgacctcaaggacgcccacagcattccggacgagaagatcgtctacatg
tgcaccggatcccagggcgagcccatggcggctctgggccgcatcgccgacgggacccac
cgcgacatcaccatcaacgagttcgacacggtcatcctggccagctcgctgattcccggc
aacgagcatgaggtctacaaggtcatcaacaagctggtgcgtctgggcgccaaggtggtc
aaccgcgacaacgcggccatccacgtctccggtcactccgacgagggcgagctgctgcac
ttctacaacatcgtgcagcccaagtgcgccatgcccatacacggcgagaaccggcacctg
gtggccaacggtctgattgccgtcaagaccggcgtggatccgcagaacgtggtcctggcc
gaggacggcgacgtggtggacctctaccatggccaggccgctgtggtcgggtccgtgccc
tgcggatacgtctatgtggacggcgactccgtgggccagctgaccgacgacgagctggag
gagcgccggattctgggcaccgagggcttcgtctccgccttcgccgtggtcgacaccgag
accagcaaggtcgtctccggccccaagctctacctgaacgccgtggccgaggacgagagc
gagttcaagtccatcaatgcccagatagtcgatcagcttgaggatgccatgtccaagggg
accaccggcacctaccagcttcagcagatgatgcgccgcaccctgggcggctggatctcc
cgcaagctgcaccgccggcccatgatcgtgcccgtggtggccgacatcgccaccgacgtg
cagccgcaggactga
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