Bradyrhizobium brasilense 5G1B: QA635_18750
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Entry
QA635_18750 CDS
T09096
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
baut
Bradyrhizobium brasilense 5G1B
Pathway
baut03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
baut00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QA635_18750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baut03021
]
QA635_18750 (rpoC)
03400 DNA repair and recombination proteins [BR:
baut03400
]
QA635_18750 (rpoC)
Enzymes [BR:
baut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QA635_18750 (rpoC)
Transcription machinery [BR:
baut03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QA635_18750 (rpoC)
DNA repair and recombination proteins [BR:
baut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QA635_18750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
WFU36336
LinkDB
All DBs
Position
4029389..4033591
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGLELEKLEATLRADMAETDSDIKHKKLAKRLKIVEAFRVSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGDMAELEHALH
SKVIHLHTKIKYRWEGLDEEGKHSKRWIETTAGRVMLGNLLPKNPKISYDIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPASKWKIVDQTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKAGEEVAKAMMKEISSTKKTAAGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQTDCGTTLGIKMRAIVDAGTVVASLGSRILGRVA
CDDVRDPATNEVVIKRDTLMEESHVDAIQQAGIQEVKIRSALTCELINGICAKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFDGKIVIKNKAI
ARNSEGSLIAMVRNMVVAIVDADGTERATHRIQYGSKMHVDEGDMVKRGQRIAEWDPYTR
PVLSEVEGTIGFEDLVEGQSISETLDESTGIAKRVVIDWRTTRGGSDLRPAIVVKGKDGK
VMKLARGGDARYMLSVDAILSVDTGGKVMPGDILARISTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAETAGTIRFGRDYKNKRRISIEPMDKTEEPREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEV
TDQGDTDMISGEQVDKIEFDALNTKAKEEGKKPATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMARIREVAVKRDKLILDEREKQ
QAAIVPTAPEAEPLALPPAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagagattatgaatcttttcaatccgacgaccccggcccaggtcttcgaccag
atccggatttcgatcgcgtctccggagaagattctgtcctggtcctacggcgagatcaag
aagccggagaccatcaactaccgcaccttcaagccggagcgtgacggcctgttctgcgcg
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcattatctgcgagaagtgctcggtcgaggtgacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctggcggcgccggtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggcctcctgctcgacatgacgctgaaggatctcgagcggatcctc
tacttcgaatactacgttgtgctcgagccgggtctcaccgcgctgaaggaccgtcagctg
ctgtctgaagacgaatatctgaaggcgcaggacgagtacggccaggattccttcaccgcc
atgatcggcgccgaggcgatccgcgagctgctcaaggggctcgagctcgaaaagctcgag
gcgacgctgcgtgccgacatggcggagaccgactccgacatcaagcacaagaagctcgcc
aagcgtctgaagatcgtcgaggccttccgcgtctccggcaacaagccggaatggatgatc
atgacggtcgtgccggtgattccgccggacctgcgtccgctggtgccgctcgacggcggc
cggttcgcgacctcggacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatggagctgcgtgcgcccgacatcatcatccgcaacgaaaagcgcatg
ctgcaggaggccgtcgacgcactgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcgcctgcatcagtgcggcctgccgaagaagatggcgctggagctgttcaag
ccgttcatctactcgcggctcgacgccaagggcctgtccaccacggtgaagcaggccaag
aagctggtcgagaaggagcgaccggaggtctgggatatcctcgatgaggtgatccgcgag
catccggtgctgctcaaccgcgcgccgacgctgcatcgcctgggcatccaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagctgcatccgctggtctgtgccgccttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctctactacgtctcgatcatgcgcgaa
ggcctgcccggcgagggcaagatcttcggcgacatggccgagctcgagcacgccctgcat
tcgaaggtcatccacctccacaccaagatcaagtaccggtgggaaggcctcgacgaggaa
ggcaagcactccaagcgctggatcgaaaccaccgcgggccgcgtcatgctcggcaacctg
ctgccgaagaacccgaagatctcgtacgacatcatcaacaagctgatgaccaagcgcgag
atttccggcgtgatcgatcaggtctaccggcactgcggtcagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgccttcaaggcgggcatctcgttcggc
aaggacgacatggtcgtgccggcgtcgaagtggaagatcgtggatcagacccgtacgctg
gcgaaggatttcgagcagcagtacaatgacggcctgatcacccatggcgagaagtacaac
aaggtcgtcgacgcctggtcgaaggccggtgaagaagtcgccaaggcgatgatgaaggag
atctcgtccaccaagaagacggcggcgggcgcggatgccgacatcaactcgatctacatg
atggcgcactccggtgcgcgtggttcgccggcccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatttccaacttcaag
gaaggtctgtcggtgctcgagtacttcaactcgacccacggcgcccgcaagggcctcgcg
gacaccgcgttgaagaccgcgaactcgggctacctgacccgccgtctggtcgacgtcgcg
caggactgcatcatcacgcagaccgactgcggcaccacgctcggcatcaagatgcgcgcc
atcgtcgacgccggcaccgtggtcgcctcgctcggctcgcgcatcctgggccgcgtggcc
tgcgatgacgtgcgcgatcccgccaccaacgaggtcgtcatcaagcgcgacacgttgatg
gaggagagccatgtcgacgcgatccagcaggccggcatccaggaagtgaagatccgctcg
gcgctgacctgcgagctgatcaacggcatctgcgccaagtgctacggccgcgatctggct
cgtggcacgccggtcaaccacggtgaggccgtcggcgtcatcgcggcacagtcgatcggt
gagcccggcacgcagctgacgatgcgcacgttccacatcggcggcgccgcccagctcaac
gagcagtcgttcgtcgaatcgaacttcgacggcaagatcgtgatcaagaacaaggcgatc
gcccgcaacagcgaaggcagcctgatcgcgatggtgcgcaacatggtcgttgcgatcgtc
gatgccgacggcaccgagcgtgcgacccaccgtattcagtacggttcgaagatgcacgtc
gacgaaggcgatatggtcaagcgcggccagcgcatcgccgagtgggatccctatacccgc
ccggtgctgagcgaggtcgagggcacgatcggtttcgaggatctggtcgaaggccagtcg
atctcggaaacgctcgacgaatcgaccggtatcgccaagcgcgtggtcatcgactggcgc
acgacgcgcggcggttcggacctgcgtccggccatcgtggtcaagggcaaggacggcaag
gtgatgaagctcgcgcgtggcggcgatgcccgctacatgctgtcggtcgacgccattctg
tcggtcgacaccggcgggaaggtgatgccgggcgacatcctggcgcgtatctcgaccgag
agcgccaagacgcgtgacatcaccggcggtctgccgcgggtggcggaactgttcgaggct
cgcaagccgaaggacgcggcgatcatcgcggagaccgcgggaacgatccgcttcggccgc
gactacaagaacaagcgccgcatctcgatcgagccgatggacaagaccgaggagccgcgc
gagtacctgatcccgaagggcaagcacatccaccttcaggacggcgacatcgtcgaaaag
ggcgatttcatcgtcgaaggcaatccggcgccgcacgacatcctggcgatcaagggcatc
gaggaactcgctgcctatctggtcaacgaaatccaggaggtctaccggttgcagggcgtg
ctcatcaacgacaagcacatcgaggtgattgtccgtcagatgctgcagaaggtcgaggtc
accgatcagggcgacaccgacatgatctcgggcgagcaggtcgacaagatcgagttcgac
gcgctcaacaccaaggccaaggaggagggcaagaagcccgccacgggtacgccggttctg
ctcggcatcaccaaggcgagcctgcagacccgctccttcttctcggcggcgtcgttccag
gagaccacgcgcgtgctcaccgaagctgccgtcaacggcaaggtggacccgctcgagggc
ctcaaggagaacgtcattgtcggccgcctgatcccggccggcaccggcgcctcgatggcg
cggatccgcgaggtcgcggtcaagcgcgacaagctgatcctcgacgagcgcgagaagcag
caggcggcgatcgtgccgacggctccggaagcggagccgctggcgctgccgcccgcggaa
tag
DBGET
integrated database retrieval system
