Bradyrhizobium brasilense 5G1B: QA635_22445
Help
Entry
QA635_22445 CDS
T09096
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
baut
Bradyrhizobium brasilense 5G1B
Pathway
baut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
baut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QA635_22445 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baut03400
]
QA635_22445 (mfd)
Enzymes [BR:
baut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QA635_22445 (mfd)
DNA repair and recombination proteins [BR:
baut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QA635_22445 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
RecG_dom3_C
AAA_16
AAA_22
AMT4_dom_C
Motif
Other DBs
NCBI-ProteinID:
WFU29377
LinkDB
All DBs
Position
complement(4771701..4775219)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQPMKSPAAMLAPGRVLTIANVAEGAEGLVISDLARAIAAQPKRPAVSLAVVCRDGARM
QQLARALEFFAPDIAVMQVPAWDCQPYDRVSPHAGILAQRLTALAKLSRLVGSDKPLIVL
TTVNAAVQRVPARDQVAAQALSVAPGNVVPMDSVVAWLEHNGYTRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRTFDAETQRTLLDMRGLDLVPVSEFQLTTETIRRF
RMGYVAAFGAPGRDDQLYEAVSEGRRHPGMEHWLPLFQERMDTLFDYLDGATVTIEPQGE
DAARERFSQIVDYYDARREALEHPGSGAVYKPLPPDQLYLTEAEWTKLLGDAPLARLTPF
AVPEGTPDVFDAGARQGRNFAPERADSNVNVFEAVVGHVGALQSQRKKVVIALWSEGSRD
RMGAMLRDHKLVNTTSVNTWRIVQATPRNETMLAVLGMESGFETDEFAVISEQDILGDRL
VRPRKASRKLDNFISEVTSLATGDLVVHVEHGIGRFVGLQTLEVSGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDSANVELDRLGGGGWQARKAKLKNRIREIAGELIKIAAERQLH
EAPKFPLQPHVYDEFCARFPYEETEDQLGAITSTLKDLEIGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGRQVAVVVPTTLLARQHSRTFTERFRGFPVNVAQASRLVSTKELSQVKKG
LTDGSVDIVVGTHALLGKTIKFKDLGLLIVDEEQHFGVSHKERLKQLRAQVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IEDLAGVKDFLDKNVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLKVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVAEPAADRW
SPQITIGMPVLIPEDYVNDLSVRLSLYRRLADLDTDEDIDAFAAEMRDRFGVLPDEVRYL
FKVAAIKAYCRRANVGKVDAGPKGAVIAFRDNSFAHPERLVSFIRQHGQAAKVRPDMKVV
FFQEWDTPEERLAGTTEILRQLANLAESKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagccgatgaaatcaccggccgcgatgctcgcgcccggccgggtgctcactatc
gccaatgtcgccgagggcgccgaggggctcgtcatctcggatctggcgcgcgcgatcgcg
gcgcagccgaagcgtccggcggtgagccttgccgtggtgtgccgcgacggcgcgcggatg
cagcagctcgcccgcgcgctggagttctttgcgcccgatatcgccgtgatgcaggttccg
gcctgggactgccagccctacgaccgcgtctcgccgcatgccggcatcttggcgcaacgg
ctcacagcgctggcaaagttgtcgcggctggtcggcagcgacaagccgctgattgtgctc
accacggtgaatgcggccgtgcagcgggtcccggcgcgcgatcaggtcgcagcgcaagcg
ctgtcggttgcgcccggcaatgtggtgccgatggattcggtcgtggcctggctcgagcac
aatggctacacccgctcgtccacggtgcgcgagcccggcgaatatgccgtgcgcggcggc
atcctcgatctgtttccggccggcctcgaccagccggtgcgcttcgacttcttcggcgac
agcctggaatcgatccgcactttcgatgccgagacccagcgtacgctgctcgacatgcgc
gggctcgatctcgtgccggtctcggaattccagctcacgaccgagaccatccggcgtttc
cgcatgggctatgtcgccgcgttcggcgcgccggggcgcgacgatcagctctatgaagcc
gtctccgagggacggcgtcaccccggcatggagcattggctgccgctgttccaggagcgg
atggacacgctgttcgattatctcgacggggcgacggttacgatcgagccgcagggcgag
gacgcggcgcgcgaacgcttctcgcagatcgttgactactatgacgcacggcgcgaggcg
ctggagcatccgggcagcggcgcggtctacaagccgctgccgccggaccagctctatctg
accgaggccgaatggaccaagctgctcggcgatgcgccgctggcgcggctgacgccgttc
gcggtgcccgaaggcacgcccgacgtgttcgacgctggcgcgcggcagggccgcaacttc
gcccccgaacgcgccgacagcaatgtcaacgtgttcgaggccgtggtcggccatgtcggc
gcgctgcagtcacagcgcaagaaggtggtgatcgcgttgtggagcgagggctcgcgcgac
cgcatgggcgcgatgctgcgcgaccacaagctcgtgaacacgaccagcgtcaacacctgg
cggatcgtgcaggcgacgccgcgcaacgagaccatgctggcggtgctcggcatggaatcc
ggcttcgagaccgacgagttcgccgtcatcagcgagcaggacattctcggcgaccgcctg
gtgcggccgcgcaaggcgagccgcaagctcgacaatttcatctcggaggtgacgagcctt
gcgaccggcgatctcgtggttcatgtcgagcacggcatcggccgcttcgtcgggctgcag
acgctcgaagtctccggcgcaccgcatgactgtctcgaactgcattatgccgccgaaaca
aaactgttcctgccggtcgagaacatcgagctgttgtcgcgttacggctccgacagcgcc
aatgtcgagctcgatcgtctcggcggcggcggctggcaggcgcggaaggcaaagctcaag
aaccggatccgcgagatcgcgggcgagttgatcaagatcgcagccgagcggcagctgcac
gaggcgccgaaattcccgctgcagccgcacgtctatgacgagttctgcgcgcgcttcccc
tatgaggagaccgaggatcagttaggggccatcacctcgaccttgaaggacctcgaaatc
ggccgcccgatggaccggctgatctgcggcgacgtcggcttcggcaagaccgaggtggcg
ctgcgcgcggcgttcgccgtggcgctggagggcaggcaggtcgcggtggtggtgccgacc
acgctgctggcgcgtcagcactccagaaccttcaccgagcgcttccgcggcttcccggtc
aatgtcgcgcaagcgtcgcggttggtgtcgaccaaggaactcagccaggtcaagaagggg
ctcaccgacggcagcgtcgacatcgtcgtcggcacccatgcgctgctcggcaagaccatc
aagttcaaggacctcggcctgttgatcgtggacgaggagcagcatttcggcgtcagccac
aaggagcggctgaagcagctgcgcgcccaggtccatgtgctgacgctgtcggcaaccccg
atcccgcgcacgcttcaattggcattgaccggcgtccgcgagctctcgatcattgcctcg
ccgccggtcgatcgccttgcggtgcgcaccttcgtcgcgccgcatgatcccctgatgatc
cgcgaggcgctgctgcgcgaacgttaccgtggcggccaggcgttctatgtcgtgccgcgg
atcgaggacctcgccggcgtcaaggatttcctcgacaagaacgtgccggagatgaaggtc
gcggtcgcccacggccagatgccgccgaccgtgatcgaggacatcatgtccgcgttctac
gacggcaagtacgacatcctgctctcgaccacgatcgtggagtccggcctcgacatcccg
aacgccaacacgctgatcgtgcaccgcgccgacatgttcggcctcgcccagctctaccag
ctgcgcggccgtgtcggccggtccaagctgcgcgcctatgcgctgttcacgctgccggcg
cagcagaagatcacggcgcaggcggagcggcggctcaaggtgctgcaatcgctggagacg
ctgggcgccggcttccagctcgcctcgcatgacctcgacatccgcggcgccggcaatctg
ctcggcgaagagcaatccggccacatcaaggaagtcggcttcgagctgtaccagtcgatg
ctggaggaggcgatcgtcaacctcaaggccggcgtcgccgagccggctgccgaccgctgg
tcgccgcagatcacgatcggcatgccggtcctgatccccgaggactatgtcaacgacctc
agcgtgcggctgtcgctgtatcgccggctcgccgatctcgacaccgacgaggacatcgac
gccttcgccgccgagatgcgcgaccgcttcggcgtgctgccggacgaggtgcgctatctg
ttcaaggtcgcggcgatcaaggcctattgccgaagggccaatgtcgggaaggtcgacgcc
ggcccgaagggcgccgtgatcgcattccgcgacaacagcttcgcccatccggagcggctg
gtcagcttcatccgccagcacggccaggccgccaaggtacggcccgacatgaaggtggtg
ttcttccaggagtgggatacgccggaagagcggctcgccggcaccaccgagatcctgcgc
cagctcgccaatctcgccgagagcaagaaggcggcttga
DBGET
integrated database retrieval system
