Bordetella avium: BAV0013
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Entry
BAV0013 CDS
T00695
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bav
Bordetella avium
Pathway
bav03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BAV0013 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bav03021
]
BAV0013 (rpoB)
03400 DNA repair and recombination proteins [BR:
bav03400
]
BAV0013 (rpoB)
Enzymes [BR:
bav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BAV0013 (rpoB)
Transcription machinery [BR:
bav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BAV0013 (rpoB)
DNA repair and recombination proteins [BR:
bav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BAV0013 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
CAJ47597
UniProt:
Q2L2M3
LinkDB
All DBs
Position
10808..14944
Genome browser
AA seq
1378 aa
AA seq
DB search
MQPRVGVLMPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQAETATADRVNEG
LQAAFTSIFPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDRE
VSKPTIKEVKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSG
KLLFSARVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFD
NFELKSEGAMMEFVPERWKGEMARFDITDRAGKVIVEKDKRINAKHLRDLANGGIQRISV
PEDFLYGRVLAKNVVDPDTGEVIALANDEITESVLDAMRAAKVLDLQTLYTNDLDRGPYI
SQTLRTDETVDQTAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNS
RLGRGDDANGPMTLTDEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRA
GLVRVERAVKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITH
KRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGF
LETPYRKIIDGRVSDQIDYLSAIEESHYVIAQANAALDAEGRFVDDLVACREAGETMLTS
PVNVHYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIER
TVAVDSGTTVQALRGGLVDHVDAERVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNIN
QRPIVKRGDRVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADD
RYTSVHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDESGIVYIGAEVSADDVLVGK
VTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQ
SIIDDELRRYRQDLNDQLRIVENDQFDRIEKLLVGKTVNGGPRKLAKGATVTKAYLADLD
RWQWFDIRLSDEPHAVVLEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVY
LAVKRRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTTADIVLNPLGVPSRMNVGQVL
EVHLGWAAKGVGQRIADMLQDERTAQVKNIRAYLEKVYNTTGTGARISELSDEEVIELAN
NLKRGVPFATPVFDGATEDEITMMLELAYPDDVAKRMQLTPSRAQAWLFDGRTGEKFERP
VTIGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAS
YTLQEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgcaacctcgagtcggagtgctcatgccttactcgtacaccgaaaaaaagcgcatccgc
aaaagcttcgctaagcgtgaagacgttcagaacgttccctttctgcttgcgacgcaactt
caatcctacctaacttttctgcaagccgagaccgccactgcggatcgggttaatgaaggc
ttgcaggcggcgtttacgtcgatttttccgatcgtcagtcacaacggtatggcgcgcttg
gagttcgtcagctatgcgcttggcgagccggtgttcgatgtcaaggaatgtcaacaacgt
ggcttgacctacgcatcgccgctgcgtgccaaggtccgcctggtgttgcttgaccgcgaa
gtcagcaagcccaccatcaaggaagtgaaggaacaggaagtctacatgggcgaaattccg
ctcatgaccacgaccggttctttcgtgatcaatggtacggagcgtgtcatcgtttcgcag
ctgcaccgttcgcccggcgtgttcttcgaacacgaccgcggtaaaacgcacagctcgggc
aagctgttgttctctgcccgcgtgattccctaccgtggctcctggctcgactttgagttc
gatcccaaggacgtgctgttcttccgtgtggaccgtcgccgcaaaatgcccgtgacgatc
ctgctgaaggccatcggcatgacgccggagtccatcctcgctcacttcttcgatttcgac
aatttcgagttgaagagcgaaggcgcgatgatggaattcgtgcccgagcgctggaagggc
gaaatggcccgattcgacatcaccgaccgtgccggtaaggtgattgtcgagaaagacaag
cgtatcaacgccaaacatctgcgtgatctcgccaatggcggcatccagcgtatttccgtg
cctgaggatttcctctatgggcgcgtgctggccaagaacgttgtggaccccgacacgggt
gaagtgattgcgttggctaacgacgaaatcaccgaaagcgtgctggacgccatgcgcgcg
gccaaggtgcttgatctgcaaaccctgtacaccaacgatctggatcgtggtccctacatc
tcgcagacgctgcgtaccgacgaaacggtcgatcagactgctgcgcgcgtagctatctac
cgcatgatgcgccctggcgagccgccgaccgaagaagcggtcgaagcgctgttccagcgt
ctgttctatagcgaagaaacctacgatttgtcgcgcgtgggtcgcatgaaggtcaatagc
cgtctgggtcgtggcgatgacgccaatggcccgatgaccctgaccgacgaagacatcctc
gagaccatcaaggtgctggtcgagctgcgtaacggccgtggccagatcgacgatatcgat
cacctgggcaaccgccgcgtgcgctgtgtgggtgaactggccgaaaaccagttccgcgcc
ggtctggtgcgtgtcgagcgcgccgtcaaggaacgtctgggccaggccgagacggaaaac
ctgatgccgcacgacctgatcaactccaagccgatctcggctgccatcaaggagttcttc
ggttcgagccagttgtcgcagttcatggaccagaccaatccgttgtcggaaatcacgcac
aagcgtcgtgtttccgctctgggccctggtggtttgacgcgcgagcgtgccggctttgaa
gtccgcgacgtgcatccgacccattacggccgtgtctgcccgatcgaaacgccggaaggc
ccgaacatcggtctgatcaactccatggcgctgtacgctcgtctgaacgagtacggtttc
ctggaaacgccttaccgcaagattatcgacggccgcgtcagcgatcagatcgactatctg
tcggctatcgaagaaagccactatgtgattgcgcaggctaacgccgcgctggatgcggaa
ggccgtttcgtcgatgacctggtcgcttgccgtgaagcaggtgaaaccatgctgacctcg
ccggtcaacgtgcactacatggacgtggcgccgtcgcagatcgtatctgtcgcggcttcg
ctgatccccttccttgagcacgatgacgccaaccgtgcactgatgggcgccaacatgcag
cgccaggccgtgccttgcctgcgtccggaaaagccgctcgtcggtaccggcatcgagcgc
actgtcgctgttgactcgggcacgaccgtgcaggcgctgcgtggcggcctggtcgaccac
gttgacgccgagcgcgtcgtgatccgcgtcaacgacgaagaaaacgtcgcgggcgaagtg
ggcgtagatatctacaacctcatcaagtacacccgttccaaccagaacacgaatatcaac
cagcgtccgatcgtcaaacgtggcgaccgcgtcgccaagggtgacgtgctggctgacggc
gcatcgactgacctgggcgaactcgctctgggccagaacatgctgatcgccttcatgccc
tggaacggctacaacttcgaagactcgatcttgatttccgagcgcgtggtggccgatgac
cgctatacctcggtgcatatcgaagagttgaccgtggtcgctcgcgataccaagctcggg
cctgaagaaatcacgcgcgacatcagcaacctggccgagacccagctcaaccgtctggat
gagtcgggcatcgtctacatcggcgccgaagtcagcgctgacgacgtgctggtcggcaag
gtaacgcccaaaggcgaaacccagctcacgccggaagaaaaactgctgcgcgccattttt
ggcgagaaggcttccgacgttaaagacacctcgctgcgcgtgccctcgggtatgacgggc
acggttattgacgtgcaagtcttcacccgcgaaggcatcgtgcgcgacaagcgtgcacag
tccatcatcgatgatgagctgcgccgctatcgccaagacctgaacgaccagctgcgcatc
gttgagaacgaccagttcgatcgtatcgagaagctgctggtgggcaagaccgtcaatggc
ggtccgcgcaagctggctaagggtgctaccgttaccaaggcttacctggcggatctggat
cgctggcagtggttcgatattcgtctgtcggacgagccgcatgccgtcgtgctggagcag
gccaaggaatcgctggagcaaaagcgccaccaattcgacctcgcgttcgaagaaaagcgc
aagaagctcacgcagggtgacgagctgcctccgggcgtgctcaagatgatcaaggtctat
ctggccgtgaagcgtcgtctgcagcctggcgacaagatggccggccgccacggtaataag
ggtgtggtctcgcgtattactccggttgaggatatgccccacatggccgatggcacgact
gccgacatcgttctgaacccgctcggcgtgccgtcgcggatgaacgttggtcaggtgctg
gaagttcacctgggttgggccgccaagggcgtgggtcagcgtatcgccgacatgctccag
gacgagcgcacggctcaggtcaagaacatccgtgcctatctggaaaaggtctacaacacg
accggcaccggcgcgcgcatcagcgagctgtcggatgaggaagtcatcgaactggccaac
aacctgaagcgcggcgttccgttcgctacgccggtgtttgacggcgcgaccgaagatgaa
atcaccatgatgctcgagctggcctacccggatgacgtggccaagcgcatgcaactgacg
ccttcgcgtgctcaggcctggctgttcgacggccgtaccggcgagaaattcgagcgtccg
gtcaccatcggctacatgcactacctgaagctgcatcacttggtcgatgacaagatgcac
gctcgttcgaccggtccgtactcgctcgtgactcagcagccgttgggcggtaaagcgcag
ttcggcggccagcgtttcggtgagatggaagtgtgggcgctggaagcctatggcgcctcc
tacaccctgcaggaaatgctgaccgtgaagtcggatgacatcaccggccggaccaaggtt
tacgaaaacatcgttaagggcgatcacgtcatcgacgccggcatgccggaatcgtttaac
gtgctggtgaaggaaattcgctcgctggccctcgacatggatttggagcgtaactaa
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