Bordetella avium: BAV1061
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Entry
BAV1061 CDS
T00695
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bav
Bordetella avium
Pathway
bav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAV1061 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bav03400
]
BAV1061 (mfd)
Enzymes [BR:
bav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAV1061 (mfd)
DNA repair and recombination proteins [BR:
bav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BAV1061 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
AAA_30
Cas3-like_C_2
AAA_22
ELP6
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CAJ48670
UniProt:
Q2KUX0
LinkDB
All DBs
Position
<1132089..1135526
Genome browser
AA seq
1145 aa
AA seq
DB search
VDIQLPSIASTLAALKPGTRYVQSCPPGSGDGWLLADLARRAGKPIVVLTADPVHAQRLA
DEIPLFAPELRVRQLPDWETLPYDAFSPHQDLISERLHTLHALMTQSVDILTVPVTTALY
RLPPPSFLAAYTFSFRQRDKLDEQALRTQLTLANYNHVTQVTAPGEFCLRGGLIDLFPMG
SALPYRLDMFDDEIESIRAFDVDTQRSLYPVGEVRLLPGREFPMDESARTLFRARFREVF
EGDPSRALPYKDIGNGIAFAGVEYYLPLFFEQTATLFDYLNSATLTVTLGNIDDAIQRFS
QDTASRYSFLKSDRERPVLPPEALFLSRDGLYEGFRGFARLALTGDSPHPDFRVAPDVAV
ARRADDPVGKLRALVGRSGARVLLCADSAGRRETLFQMLAEQNLAPAEQTDTIGAFLASS
ASFGLTIAPMAAGFGLAENGLVFLTENDLYPGNGGSRRRGKRAQEGASNVEAMVRDLAEL
REGDPVVHAQHGIGRYHGLINMDMGEGEMEFLHLEYASGATLYVPVSQLHVIARYSGADP
EAAPLHQLGSGQWDKARKKAAKQVRDTAAELLALYAQRAAREGYAFNLPLSDYESFAEGF
GFEETVDQSAAIQAVIMDMTSGKPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCP
TTLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKE
VRFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIA
TAPQKRLAIKTFVRREDGSTIREALLRELKRGGQAYFLHNEVETIHNRRARLEELVPEAR
IGVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSANTIVIHRADRFGLAQLH
QLRGRVGRSHHQAYAYLLTPGEDAITANAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGE
ILGDSQSGNIQEVGFSMYNEMLSEAVRALKSGEEPDLDAPFNLACEVNLHAPALLPSDYC
PDVHGRLAIYKRLSHAQDEDDLIRIQEELIDRFGKLPEAAQTLLMTHRLRLMGEPLGIVK
IDVSEAQALLQFGAKAAVDPLRIIELVQKQRHIKLSGQDKLRIEITAPQTSARFDAVRAV
LRALK
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
gtggacatacaacttccctcgatcgcttccaccctggccgccctgaagcccggcacgcgc
tatgtccaatcttgcccgcccggttctggcgatggctggttgttggccgatctggcccgg
cgggcaggcaaacccattgttgtgctgacggccgatccggtccatgcacagcgtttggca
gatgaaattcccctgtttgcgcccgaattgcgcgtgcggcagttacccgattgggagacc
ctgccttacgatgctttttcaccgcaccaggacttgatctccgagcgcctgcatacgctg
catgcgctcatgacgcagtccgtcgatatcctcacggttccggtcaccacggctttgtac
cgtctgccgccgccgtcttttctggcggcttataccttttcgttccgccagcgcgacaag
ctcgatgaacaggccctgcgcacgcaattgacgctggccaattacaaccacgtcacgcag
gtcacggcgcccggcgagttctgcctgaggggcgggctcatcgatctgtttcccatgggc
tccgccttgccttaccggctcgatatgttcgatgacgaaatcgagtctatacgcgcgttc
gacgtcgatacgcagcgcagcctctatcccgtcggtgaggtgcgtctgctgcccgggcgc
gagtttcccatggacgagtccgcacgcacgcttttccgtgcgcgtttccgagaagtgttc
gagggcgacccgtcccgcgccctgccgtataaagatattggcaatggcatcgccttcgcg
ggcgtcgagtactacctgcccttgttttttgaacagactgcgacgctgttcgattatctg
aatagtgccaccctgaccgtcacgctgggcaatatcgatgatgccatccagcgtttttct
caggatacggccagccgctatagctttctgaaaagcgatcgcgagcggccggtgctgccg
cccgaggcgctatttctgagccgtgacggcctgtacgaaggtttccggggctttgctcgc
ctggccctgacgggcgactcaccgcaccccgattttcgcgtcgcgccggacgtggccgtc
gcgcgccgcgccgatgatccggttggcaaactgcgggctttggtgggccgctcgggggcg
cgtgtgctgttgtgcgccgattcggccgggcggcgcgaaaccttgtttcagatgctggcc
gaacagaatctcgcgccggcggagcaaacggacaccatcggagcctttctcgcctcgtca
gcctcgtttggcctgaccatcgcgcctatggcggcgggtttcggcctggccgagaacggc
ctggtttttcttaccgaaaacgatctttacccgggcaatgggggcagccggcgccggggc
aagcgcgcccaggaaggggccagcaatgtcgaggccatggtgcgggatctggccgagctg
cgcgaaggcgatcccgtcgttcatgctcagcacggtatcggccgttatcatggcctgatc
aatatggacatgggcgagggcgagatggagtttcttcatctggaatacgccagcggcgcc
acgctctatgtcccggtatcgcagcttcatgtgatcgcccgctatagcggcgctgatccc
gaggctgcgcctttgcatcagcttggctccgggcaatgggacaaggcccgcaagaaggcc
gccaaacaggtgcgtgacacggctgccgaactgttggcgttgtacgcgcaacgcgcggcg
cgtgaaggctatgccttcaatctgcccctctcggattacgagtcttttgccgagggcttt
ggtttcgaggaaaccgtcgatcaatccgcggctatccaggctgtcatcatggatatgacc
tcgggtaagccgatggatcgcctggtctgcggcgacgtgggctttggcaaaaccgaggtg
gctttgcgtgcggctttcctggcggtggccaatggcaaacaggttgccttgctatgcccg
accacgctgttggcggagcagcatgcgcagaccttttccgaccgtttcgccgattggcca
gtgcgcgtggtggaactgtcgcgctttcgctccgccaaagaagtggccgcagccgtcgag
ggcatcaatgatggccgcgtggatatcgtgatcggcacgcacaagattctctccaaagag
gtgcgcttcaagcgtctggggctggtcatcatcgatgaggagcaccgtttcggcgtgcgc
cagaaagaggccttgaaggccttgcgggccgaggtcgatgtgctcaccctgacagccacg
cccatcccgcgcacgctgggcatgtcgctcgagggcatacgcgatttttcggtcatcgcc
acggccccgcaaaagcgcctggccatcaagacctttgtgcggcgcgaggatggcagcacc
atacgcgaagccttgttgcgtgagctcaagcggggagggcaggcgtatttcctgcataac
gaagtcgagaccatccacaaccggcgggcacgtctcgaagagctggtgcccgaggctcgc
ataggcgtggcccacggtcagatgccagagcgcgagctagagcaggtgatgaagggcttt
tatcagcagcgctataacgtgctgttgtgcaccactatcatcgaaaccggtatcgatgtg
cccagcgccaataccatcgtgattcatcgtgctgaccgtttcggtctggcccagttgcat
cagttgcgcggccgcgtgggccgctctcatcatcaggcctatgcctatttgctcacgccg
ggcgaagatgcaatcaccgccaacgccaaaaagcggctggaggccatccaggcgatggag
gagctggggtcgggtttctatctggccatgcatgaccttgaaatccgcggcaccggcgag
atcctgggcgattcgcaatctggcaatatccaggaggtcggtttctcgatgtacaacgag
atgctgagcgaagccgtgcgcgctctcaagtcgggtgaagagcctgatctggatgcgccc
tttaacctggcttgcgaagtcaatctgcatgcaccagcgttgctgccatcggattactgc
cccgatgttcacggccgtctggccatctataaacgcctgtcgcatgcccaggatgaggac
gatctgatccgtatccaggaagagctcatcgaccgattcggcaaactgcccgaggcagcc
cagactttgctcatgactcaccgcttgcgcctgatgggcgagccgctaggtatcgtcaag
atcgatgtcagcgaagctcaggctttgctgcaattcggcgccaaggcggcggtggacccc
ctgcgcatcatcgaactggtgcaaaagcagcgtcacatcaagctgtcgggccaggataag
ctgcgtatcgaaatcactgcgccgcagaccagcgcacgctttgacgcggtgcgtgccgtg
ctgcgcgccttaaaataa
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integrated database retrieval system
