Bordetella avium: BAV1108
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Entry
BAV1108 CDS
T00695
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bav
Bordetella avium
Pathway
bav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAV1108 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bav03019
]
BAV1108 (rne)
03009 Ribosome biogenesis [BR:
bav03009
]
BAV1108 (rne)
Enzymes [BR:
bav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BAV1108 (rne)
Messenger RNA biogenesis [BR:
bav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAV1108 (rne)
Ribosome biogenesis [BR:
bav03009
]
Prokaryotic type
rRNA processing factors
BAV1108 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
CAJ48717
UniProt:
Q2KUL9
LinkDB
All DBs
Position
complement(1184285..1187332)
Genome browser
AA seq
1015 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSYFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVPQGMSIIARTAGIGRNVDELQ
WDLAYLLQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAA
AFMSVVMPDNVQRVKRYRDDTPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAV
DVNSARSTRGADIEETALRTNLEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSALH
VLRLLEEEAMKENTAAVHAQVPVDVATFLLNEKRADIAKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEETKTSFELAEAPATDVTWSPREQEVKARPEALVKGITPAQPAPVST
PAPAAKPAEGSGFGGLFKRLINWISGSSETKPAEKSAEQSKRPSGNRAKRAQDGQERRGE
RHGSDRNRNRRETSEGQEQRRGARRQDETRTEQRNEQRAVPEQRAESRQNRTTENRNAEA
RNTETRDNRENLAAETRALAPETDGEGTPRNGRNRRGRGRGRREDGVTDAPMSEQETMVA
ALAETVASALPTMPAAPAATLVATTEPEAQPDTEASQGAEGENASDPERKRRRRRSRRGR
RSQEDGVTLNAEGQPIDGDDANDDQADEAAPAAVQVVSSHIATPVQTAPVETAPVVAAVP
AETAPAAAAAPVETAPVAAAAPVETTPVVAAAPVETAPAVAAAPAETAPVVAAAPVETAP
VAAAAPVETAPVLAAAPVETAPVAAAAPVETVPVAAAAPVETAPVAASPAAPIVISDNTL
NAVVQAAGLTWVQTDPARQVNAAPQADAAPVRLGRERKPVAQVSATPLVQVETQQ
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgtttaatgcgacgcaccaggaagaactgcgcgtcgcaatcgttgat
gggcaaaagctcatcgacctcgatatcgaaaccgccggccgcgaacagcgcaaaggcaat
atctacaaaggcgtcatcacccgcatcgaacccggtctggaggcctgcttcgtcaactac
ggcgaagatcgtcacggttttctgcccttcaaagaagtggcccgcagctacttcaaagaa
ggcgtggatgtgcgcagcgcccgcatccaggacgccctgcgcgaaggccaggagctgatc
gtccaggtcgaaaaagaggaacgtggcaacaagggcgccgccctgaccaccttcatctcg
ctggctggccgttatctggtgctgatgcccaacaacccgcgcggcggcggcgtctcccga
cgcgtggaaggcgaagatcgccaagagctgcgtgacacgatggagcagctcgatgtgccg
caaggcatgagcatcatcgcccgcacagccggcatcggccgcaatgtcgatgagctccaa
tgggatcttgcctatctcctacagctctggacagccatcgatggcgccgcgcgtgataac
gccgctcccatcctgatttacctggagtccagcctggtcatccgggctatccgcgactat
ttttcgccggaaatcggtgaaatccttatcgataccgacgaaatcgctgatcaggccgcc
gcattcatgagcgtggtgatgccggacaacgtccagcgcgtcaaacgctaccgcgacgac
acgccgctgttctcgcgcttccagatcgaacaccagatcgaaacggcctattcgcgtacg
gtacaactgccttcgggcggcgccgtggtcatcgaccacaccgaagcgctggtcgccgtc
gacgtgaactcggcccgctccacccggggcgccgacatcgaggaaaccgccctgcgcacc
aatctggaggcggccgacgaagtggcccgccagttgcgcctgcgcgacctcggcggcctg
atcgtaatcgacttcatcgacatggaagacagcaagaatcaacgcgctgtcgaacaacgc
ctgcgcgatgccttgcactttgatcgcgctcgtgtgcagatgggcaagatttcccgcttt
ggcctgatggagttgtcgcgccaacgcctgcgccccgccctgaacgagggctcgcacatc
acctgcccgcgctgcaccggcaccggcgtcatccgcgatgcggaatccagcgccctacat
gtgctgcgcctgctggaagaagaggccatgaaggaaaacacggcggccgtgcacgctcag
gtgccggttgatgtcgccaccttcttgctgaacgaaaagcgcgccgacatcgccaagatg
gaagcccgcctgaaggtcaatctggtgctgatccccaacaagcacctcgaaacgccccac
caccatatcgagcgcctgcgccacgacgatccgcgcctggaagaaaccaagaccagcttc
gagctggccgaagcacctgccaccgatgtcacctggagcccgcgcgagcaggaagtcaag
gctcgccccgaggcactggtcaagggcatcaccccggcccagcccgccccggtatcgacc
cctgccccggcggccaaacctgccgagggttcgggatttggcggcctgttcaagcgcctg
atcaactggatctcgggcagcagcgaaaccaagccggctgaaaaatcggctgagcaaagc
aagcgccccagcggcaatcgcgccaagcgcgcccaagacggccaagagcgccgtggcgag
cgtcatggttcggaccgcaaccgcaatcgccgtgaaaccagcgaagggcaagagcaacgc
cgtggcgcacgccgccaggacgaaacacggacggaacagcgcaacgaacagcgcgctgtg
cccgagcagcgcgcagaatcgcgccaaaaccgcacgacggaaaatcgtaacgcggaagct
cgcaacaccgagacccgcgacaatcgggaaaacctcgccgccgaaacgcgcgcgctggct
cccgagacggatggcgaaggcacaccgcgtaacggccgcaatcgccgtggacgtggccgc
ggccgccgcgaagacggcgtcaccgacgcaccgatgagcgaacaggaaaccatggtggcc
gcactggccgaaaccgtggcctccgccctgcccaccatgccggccgctcccgccgcaaca
ctggtcgcaacgactgaacccgaagcccagcctgacaccgaggcatcgcaaggtgccgag
ggcgaaaacgccagcgatccggaacgcaagcgccgccgccgccgcagccgccgcggccgt
cgcagccaggaagacggcgtaacgctgaatgctgagggtcaacccatcgacggcgacgac
gctaatgacgaccaggctgatgaagcggctcccgccgccgtccaggttgtgagcagccac
atcgctaccccagttcaaaccgccccagtggaaacagctccggtcgtggctgccgtcccg
gcggaaacggctccggccgccgctgccgccccggtggaaacggccccggtcgccgctgcc
gcccccgtggaaacgactccggtcgtggctgccgcccccgtggaaacggctccggccgtc
gcagctgccccggcggaaacagctccggtcgtggctgccgccccggtggaaacggctccg
gtcgccgctgccgccccggtggaaacggctccggtcctcgctgccgccccggtggaaacg
gctccggtcgccgctgccgccccggtggaaacggttccggtcgccgctgccgccccggtg
gaaacggccccggtcgccgcaagcccggccgcccccattgtcatcagcgacaacacgctg
aacgccgtggtgcaagccgctggcctgacctgggtgcagaccgatccggcacggcaggtt
aacgcagcgcctcaagccgatgccgcgccggtgcgcctgggccgtgagcgcaagcctgta
gcccaagtatccgccacgccgctggtgcaagtcgaaacgcagcagtaa
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