Bacillus velezensis FZB42: RBAM_007130
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Entry
RBAM_007130 CDS
T00582
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bay
Bacillus velezensis FZB42
Brite
KEGG Orthology (KO) [BR:
bay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bay03009
]
RBAM_007130 (rlmD)
Enzymes [BR:
bay01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
RBAM_007130 (rlmD)
Ribosome biogenesis [BR:
bay03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RBAM_007130 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_15
PrmA
MTS
RrnaAD
Methyltransf_11
N6_N4_Mtase
Methyltransf_32
Methyltransf_23
TPMT
UPF0020
Ubie_methyltran
N6_Mtase
Methyltransf_12
PCMT
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
ABS73098
UniProt:
A7Z272
LinkDB
All DBs
Position
697569..698963
Genome browser
AA seq
464 aa
AA seq
DB search
MKMKPPIEKNEYYDVTFEDLTHDGAGVAKVQGFPIFVPNALPEEKAQIKVTRVKKGFAFG
RLIELKEESPHRTDAPCPIYKQCGGCQLQHMTYEGQLLFKQKQVKDVLERIGKLNLSKVI
VHPTLGMEDPWNYRNKAQVPVGEREGGLVAGFYQQRSHDIIDMSACLIQQSKNDEAVQAV
KDICTSYGVKAYNEERHKGWLRHIMVRYGVVTGEMMIVFITRTSDFPHKAKIIEDITAQF
PHVKSIVQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLY
DKALEYAELQGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITN
AEFAVGEAETVIPKWYKEGITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCNPGTL
ARDLRMLEDGGYQTLEVQPVDMFPHTNHVEVVSQMILKNEAGSR
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgaaacccccgatagaaaaaaatgaatactatgatgtgacatttgaggatttg
acgcacgacggagcgggcgtcgcaaaggttcagggcttcccgatcttcgtgccgaacgcc
ctgcctgaggaaaaagcgcaaatcaaagtgacacgcgtcaaaaaaggcttcgctttcggc
cgcttgattgaactgaaagaagaaagcccgcacagaacggatgccccgtgtccgatctac
aagcaatgcggaggctgccagcttcagcacatgacctatgaaggccagctcttgtttaaa
cagaaacaagtcaaagacgtcttagaacggatcggcaagctgaacctttcaaaagtcatc
gtgcatccgacgctcggcatggaagacccgtggaactacagaaacaaagcgcaggtgccg
gtaggagaacgggaaggcggactcgtcgccggattctatcagcaaagaagccatgacatc
atcgatatgagcgcctgcctgatccagcaatccaaaaacgacgaagccgttcaagctgtc
aaagacatttgcacctcatacggcgtcaaagcctacaacgaagaacgccacaaaggctgg
ctccgccacatcatggtcagatacggcgtcgtcacaggcgaaatgatgatcgtcttcatc
acaagaacaagcgatttcccgcacaaagcgaagatcatcgaagacatcacagcgcaattc
ccgcacgtcaaatccatcgtgcaaaacatcaatccaaacaaaacaaacgtcatctttggg
aacgaaacaaacgtcatctggggcgaagaatacatctatgacctcatcggagacgtcaaa
ttcgccatctccgccagatcgttctatcaggtcaacccggaacagacaaaagtgctctac
gacaaagcgcttgagtacgcggagctgcaaggggaagaaaccgtcatcgacgcctactgc
ggcatcggaacgatttctctatttctggcgaagcaggcgaagaaagtatacggcgtcgaa
atcgtgccggaagccatcgaggatgcaaaacgcaacgctgagctgaacggcatcacaaac
gcagaattcgcagtcggagaagcggaaaccgtcattccgaaatggtataaagaaggtatc
acggccgacaccctcgtcgtcgacccgccaagaaaaggctgtgacgaagcgctactgcgg
acaatcatcgacatgaaaccgaagcgagtggtgtacgtgtcctgcaatccaggaacgctt
gcaagagatttgcggatgcttgaggatggcgggtatcagacgctcgaagtgcagcctgtg
gatatgttcccgcatacgaatcatgtggaggtagtatcgcagatgattttaaaaaatgaa
gcaggctcccgataa
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