Bacillus velezensis FZB42: RBAM_030900
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Entry
RBAM_030900 CDS
T00582
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bay
Bacillus velezensis FZB42
Pathway
bay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBAM_030900 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bay03019
]
RBAM_030900 (rnr)
03016 Transfer RNA biogenesis [BR:
bay03016
]
RBAM_030900 (rnr)
Enzymes [BR:
bay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RBAM_030900 (rnr)
Messenger RNA biogenesis [BR:
bay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RBAM_030900 (rnr)
Transfer RNA biogenesis [BR:
bay03016
]
Prokaryotic type
tRNA degradation factors
RBAM_030900 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
S1CSD-TOTE-2
S1_RRP5
OB_Dis3
TFIIE_beta
GPIID_WHD
CSN8_PSD8_EIF3K
Motif
Other DBs
NCBI-ProteinID:
ABS75421
UniProt:
A7Z8U5
LinkDB
All DBs
Position
complement(3205133..3207466)
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AA seq
777 aa
AA seq
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MEKEAFMDRLLAFMKEEAYKPLTVQELEEMLNITEADEFKELVKALVALEETGQIVRTRS
NRYGLPEKMNLVKGKISAHAKGFAFLLPEDTSLSDVFIPPNELNTAMNGDIVMVRLNSQS
SGSRQEGTVIRILERSIDRVVGTYTETKSFGFVIPDDKKITSDIFIPKHANNGAAEGHKV
VVKLTSYPEGRMNAEGEIVEILGHKNDPGIDILSIIHKHGLPGDFPAEAMEQATSTPDTI
DEKDIKDRRDLRDQVIVTIDGADAKDLDDAVTVTKLDNGSYKLGVHIADVSHYVTENSPI
DKEALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMTINQQGQVTEHEIFQ
SVIKTTERMTYSDVNRILTEDDAELKERYEPLVPMFKDMERLAEILRAKRMDRGAVDFDF
KEAKVLVDEEGAVKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNA
EKLQKFLEFVTTFGYIVKGKAGDIHPRALQSILDEVRDRPEETVISTVMLRSMKQAKYDP
QSLGHFGLATEFYTHFTSPIRRYPDLIVHRLIRTYLINGQSDEATQEKWAERLPEIADHT
STMERRAVDAERETDDLKKAEYMLDKIGEEFDGMISSVTNFGMFVELPNTIEGLVHVSFM
TDDYYRFDEQHFAMIGERTGNVYRIGDEITVKVVDVNKDERNIDFEIVGMKGTRRPRETT
GDRRKRGRPARKRVLNSNTPASPPKSEEKGEWFTKPKKKKKKRGFQNAPKQKRKKKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagcgtttatggaccgtcttctcgcgtttatgaaggaagaggcgtacaag
ccccttaccgttcaggaacttgaggagatgctgaacatcacggaagcagatgaatttaaa
gagctggtaaaagcgctggtggcgctcgaggagacgggacagatcgtccgcaccagaagc
aaccgctacgggcttccggaaaaaatgaatttagtaaaaggaaaaatttccgcgcatgca
aagggattcgcgtttctattgccggaggatacctctttaagcgatgtgtttattccgccg
aatgagctgaatacggccatgaacggcgatatcgtcatggtgcggctcaattcccagtca
agcggatcgagacaggaaggcacggtcatccgcatcttggaaagaagcatcgaccgcgtc
gtgggcacatacacagaaacgaaaagcttcggttttgtcatcccggatgataagaaaatc
acgagtgatatttttattccgaaacatgccaataacggcgctgcggaaggccataaagtc
gtcgtcaaactgacaagctaccctgaaggcagaatgaacgccgaaggagaaatcgttgaa
atactcggccataaaaatgatccgggcatcgatattttatcaattatccataagcacggc
ctgccgggagattttccggctgaagcgatggagcaggcaacaagcacgccggataccatc
gatgaaaaagacatcaaagaccgccgtgatctccgcgatcaggtcattgtcaccattgac
ggcgcggatgcgaaggatctggatgacgccgtcaccgtgacaaagcttgataacggcagc
tacaagctcggcgtccatattgccgacgtcagccattacgtcacggagaattccccgatt
gacaaagaagcgctggaaagagggacaagcgtgtacttggttgaccgggtcattccgatg
attccgcacagactgtctaacggaatctgttctttaaatccgaaggtcgaccgcctgacg
ctttcctgcgaaatgacaatcaaccagcagggccaggtgacagagcacgagatcttccaa
agcgtcattaaaacgacggaaagaatgacctattcagatgtcaaccggatcctcacagaa
gacgacgccgagctgaaagaaagatatgagccgctcgtcccgatgtttaaagacatggaa
cgtctggcggaaattctccgggcgaaacggatggaccgcggcgccgtggattttgatttc
aaagaggcgaaagtgctcgtcgatgaggaaggcgccgtaaaagacgtcgtcatcagagag
cgctcagtagcggaaaagctgattgaagaattcatgcttgtcgcaaacgaaacggtggcc
gagcacttccattggatgaacgtgccgtttatttaccggattcacgaagagccgaacgcc
gaaaaactgcaaaagttcctggagttcgtcacgacattcggttatatcgttaaaggaaaa
gccggagacattcatccgcgcgcgctgcaaagcattcttgatgaagtgcgggaccgtccg
gaagaaacggtgatttcaaccgtcatgctccgttccatgaagcaggcgaaatacgacccg
caaagcctgggccatttcgggctggcgactgaattttatacgcacttcacatcgccgatc
cgccgttatcctgacttaatcgttcacaggctgatcagaacgtatttgatcaacggacaa
tcggacgaagcgactcaagaaaagtgggccgaacgccttccggaaatcgctgaccatacg
tcaacgatggaacggcgcgccgttgatgcagagcgggaaacggacgatctgaaaaaagcg
gaatatatgcttgataaaatcggcgaggaatttgacggcatgatcagttccgtcacgaat
ttcggaatgtttgtcgagctgccgaatacgattgaaggtcttgtgcacgtcagctttatg
acggatgattattaccgttttgacgagcagcatttcgccatgatcggcgaacgcacgggc
aacgtttaccggatcggagatgaaatcacggtcaaagtcgtcgacgtcaataaagatgag
agaaacatcgactttgaaattgtcggcatgaaaggcacccgccgtccgagagaaacgaca
ggcgaccgcagaaaacgcggcagaccggcgcggaaacgcgtgttaaacagcaataccccg
gcttcaccgccgaaatcggaggaaaaaggggaatggtttacaaaaccgaagaagaaaaag
aaaaaacgcggtttccaaaacgcgccgaaacaaaaacgcaaaaagaagaagtaa
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