Brevibacillus aydinogluensis: BSPP4475_09310
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Entry
BSPP4475_09310 CDS
T09295
Symbol
srmB
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bayd
Brevibacillus aydinogluensis
Pathway
bayd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bayd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSPP4475_09310 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bayd03019
]
BSPP4475_09310 (srmB)
03009 Ribosome biogenesis [BR:
bayd03009
]
BSPP4475_09310 (srmB)
Enzymes [BR:
bayd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSPP4475_09310 (srmB)
Messenger RNA biogenesis [BR:
bayd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSPP4475_09310 (srmB)
Ribosome biogenesis [BR:
bayd03009
]
Prokaryotic type
rRNA helicases
BSPP4475_09310 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
CAJ1002515
UniProt:
A0AA48RC81
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All DBs
Position
4475:1890000..1891586
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AA seq
528 aa
AA seq
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MTIFSDFPLHKSILQAIYDMGFEEPSPIQAACIPKVLEGGDLIGQAQTGTGKTAAFGIPL
IEKVTPGNRVQAIVLTPTRELAIQVAGELLRISKYKKVRTLPIYGGQSIGHQIRALRQGV
QVVVGTPGRVLDHLRRKTLKLDHVHTLVLDEADEMLDMGFIDDIETIINHLPEDRQTLLF
SATMPPEIKRLATRYMKQPQTIAVSREEVTAPLIEQVYYKVFERNKVETLCRILDSEDVE
LGIIFCRTKRGVDELTEVLQARGYLADGLHGDLSQAQRDKVMNAFREGSIELLIATDVAA
RGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREMRQMMFIQKQTKA
QLICRNVPSLEEVAERKQEQLREQLVNLLESDGVADMYLKVANSLIAQYPAEKIAAAALH
LAFHTEIGETDDTDAYNFGETGAAKGMVRFFLNVGRNVNVRPQDLVREISESVGIPGKAV
GRIDIFENFTFVEVPEDVAPFVYESLRQTRINGRRINLEPAKPRAKRS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgacgattttttctgattttcctttacataaatccattctgcaagccatttacgacatg
ggctttgaagagcccagcccgatccaggctgcctgcatcccgaaagtactggagggcggc
gacctgatcggtcaggcgcaaacaggtacgggtaaaaccgccgcgttcgggattccgctg
attgaaaaagtgacgccgggcaaccgcgtgcaggcgattgtgctcacgcccacccgcgaa
ctggccatccaagtggcaggcgagcttttgcgcatctccaaatacaaaaaggtgcggaca
ctgccgatctacggcggacagtccatcggccaccaaatccgtgcgctccgccagggtgtc
caggtcgtggtggggacccccggccgcgtgcttgaccacctgcgccgcaaaacgctgaag
ctggatcacgtacacacactggtcctggacgaagcggatgaaatgctggacatgggattc
atcgacgacattgaaaccattatcaaccacctcccggaagaccgtcagaccctgctgttc
tccgcgaccatgccgccggaaatcaaacgcctggcgacccgctacatgaaacagccgcag
acgatcgccgtcagccgcgaagaagtgaccgctccactgatcgagcaggtgtactacaag
gtatttgaacggaacaaggtggaaaccctctgccgcattctggacagcgaagacgtcgag
ctgggaatcatcttctgccgcactaagcggggcgtggacgagctgaccgaagtgctgcag
gcgcgcggctacctggccgacggtctgcacggcgacctgtcccaggctcagcgcgacaag
gtgatgaatgcgttccgcgagggttccatcgaactgttgatcgcgaccgacgtggcggcg
cgcggcattgacgtcggcaacgtctcccacgtcatcaactacgacattccgcaggattcg
gaaagctacgtgcaccggatcggccgtacgggccgcgccggccgcaaaggcattgccatg
acgctggtgacgccgcgcgagatgcgccagatgatgttcatccagaaacagaccaaagcc
caactgatctgccgcaacgtgccgtccctggaggaagtggcggaacgcaagcaggaacag
ctgcgggaacaactggtcaacctgctggagagcgatggagtggccgacatgtacctgaag
gtggccaactcgctcatcgctcagtacccggctgaaaaaatcgccgctgcagcgctgcac
ctcgcgttccataccgagatcggcgagacggacgataccgacgcctacaacttcggggag
acgggtgccgccaagggaatggtgcgtttcttcctcaacgtgggccgcaatgtcaacgta
cgcccgcaggatttggtgcgggagatttccgagtccgtcggaatccccggaaaggcggtt
ggccgcatcgacatcttcgagaacttcaccttcgtggaagttcccgaagacgtggccccg
ttcgtctacgaatcgctgcgtcaaacgcgcatcaacggcagacggatcaatctggagccg
gcaaaaccgcgcgccaagcgttcctga
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