Brevibacillus aydinogluensis: BSPP4475_18745
Help
Entry
BSPP4475_18745 CDS
T09295
Symbol
rnjA
Name
(GenBank) mRNA degradation ribonuclease J1/J2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bayd
Brevibacillus aydinogluensis
Pathway
bayd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bayd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSPP4475_18745 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bayd03019
]
BSPP4475_18745 (rnjA)
Messenger RNA biogenesis [BR:
bayd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSPP4475_18745 (rnjA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
CAJ1004333
UniProt:
A0AA48RG16
LinkDB
All DBs
Position
4475:complement(3754937..3756589)
Genome browser
AA seq
550 aa
AA seq
DB search
MSDVKIFAMGGLGEIGKNMYCVEYEDEIIIIDCGVKFPENEMFGIDLVIPDITYLIENQH
KIKALLLTHGHEDHIGAIPYVLKQIKVPIYGGRLTLGLVKAKLEEHRMQNEVKLIPISED
TEIPFKKLKATFFRTNHSIPDSFGIVIHTPEGMVIHTGDFKFDLTPVGPTTEFGKIARIG
SSGDVLALLSDSTNSERYGFTMSERTVGEGILDVVKKARGRIILATFASNVHRLQQVVDA
AMECDRKVAVIGRSMEKVFQIGQELGYIQMPEGMLIDVKHIDNYADNQVLIICTGSQGEP
MAALTRIASGSHRSVQIYPEDTVIISASPIPGNTVNVSRTIDKLYRAGANVVLSHVFDIH
ASGHGSSEELKLMLNFIRPRYFVPIHGEYRMLKMHARLAQQVGIEESNIFIMDNGDVLNC
TREKAWLSKVPAGIVLIDGSGVGDVGNIVLRDRKHLAEDGLMVVVVSLDMKNFKILTGPD
IVSRGFVYVRGSESLIQEATVLVRQKLQEALDKKIKEWSELKSQINEVIKPFIYEKTGRN
PMILTILMEV
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacgtaaagattttcgcgatgggcggtctcggcgaaatcggcaaaaacatgtac
tgtgtcgagtacgaagacgagatcatcatcatcgactgcggggtcaaatttcccgagaac
gagatgttcggcattgacctggtcatcccggacatcacctatctgatcgagaatcagcat
aagatcaaggcgctgctgttgacgcacggacacgaggaccatatcggtgccattccgtat
gtgttgaagcagatcaaggtgccgatttacggcggccgcctcaccctgggcctggtcaag
gccaagctggaagaacaccggatgcagaacgaggtaaagctgatcccgatttcggaggac
acggagattccgttcaaaaagctgaaagccacctttttccgcaccaaccacagcattccc
gattcgttcggtatcgttatccacacgccggagggcatggttattcacacgggcgacttc
aagtttgacctgacgcccgtcggccccactacggagttcggcaaaatcgcacggatcggc
agcagcggcgacgtgctggcactgctgtcggacagcaccaacagcgaacggtacggattt
accatgtcggagcgcacggtgggcgaaggcattctcgacgtggtgaaaaaggcgcgcggt
cggattatcctggccacattcgcgtcaaacgtgcaccgcctgcagcaggtggtggacgcg
gccatggagtgcgaccggaaagtggcggtcatcggccgcagcatggaaaaagtgtttcag
atcggacaagaactgggttacatccagatgccggagggcatgctgattgacgtcaagcac
atcgacaactacgcggacaaccaggtgttgatcatctgcacgggcagccagggcgagccg
atggcagcactgacccgcatcgcctccgggtcccaccgctcggtgcagatttatccggag
gacacggtgatcatctccgcttcgccgatcccgggcaacacggtaaacgtcagccggacg
attgacaagctgtaccgggcgggagccaacgtggtgctgagccacgtatttgacatccac
gcgtccggccacggcagcagcgaggaactgaagctgatgcttaactttatccgcccccgc
tactttgtgccgatccacggcgagtaccgcatgctgaaaatgcacgccagactggcgcag
caggtgggcatcgaggagagcaacatcttcatcatggacaacggcgatgtgctcaactgc
acgcgggaaaaagcatggctgagcaaagtgcccgctggaattgtcctgatcgacggcagc
ggcgtgggcgacgtcggcaacatcgtgctgcgcgaccgcaagcacctggcggaagacggc
ctgatggtggtcgtggtaagcctggacatgaaaaacttcaagatcctgaccggcccggac
atcgtcagccgcggctttgtctacgtgcgcggatcggaatcgctgatccaggaggccacc
gtgctcgtccgccagaagctgcaggaggcgctggacaagaagatcaaggaatggtccgag
ctgaagtcgcagatcaacgaagtgatcaagccgttcatttatgaaaaaaccggccgcaat
ccgatgattttgaccatcctgatggaagtgtag
DBGET
integrated database retrieval system
