Bacillus amyloliquefaciens TA208: BAMTA208_06665
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Entry
BAMTA208_06665 CDS
T01824
Name
(GenBank) single-strand DNA-specific exonuclease; phage SPbeta
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
baz
Bacillus amyloliquefaciens TA208
Pathway
baz03410
Base excision repair
baz03430
Mismatch repair
baz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
baz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BAMTA208_06665
03430 Mismatch repair
BAMTA208_06665
03440 Homologous recombination
BAMTA208_06665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baz03400
]
BAMTA208_06665
DNA repair and recombination proteins [BR:
baz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BAMTA208_06665
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BAMTA208_06665
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BAMTA208_06665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_54
NPHP3_N
AnkX_ins
Motif
Other DBs
NCBI-ProteinID:
AEB23508
LinkDB
All DBs
Position
1286234..1287922
Genome browser
AA seq
562 aa
AA seq
DB search
MIYKLIGENDYKNPIYTIIKNRDINADTFFNLNSSVINHYSLLNNMDKGINCLLKHIELK
NNIFIQVDSDCDGYLSSAILINYLNQAFPGTKVKWRLHDKKDHGASLETIPEDTHLLIIP
DAGSNQYALHQELKERGIDTLVLDHHECEKESNAAIIINNQLSNEYQNKRLSGVGIVYKF
CKALDDKLGLDLADSFLDLVAIGNIGDVIDLREPETRYYVKKGLKQIKNPLIKEIVGRQS
FFLDGNINIHFTAFSIVPFINAAIRYATMEEKTDMMKALLGSQESVYYPRKKIYEPIVKS
VARRISNTKNRQKKSLEKPVNVLIEQLIKENKTNDKVIVLDVSDELKSSFTGLVATQLAK
KFKRPVMLGRKTKEGKFGGSARGYEKSGIKDFKQLLTETGLFNFCEGHANAFGFEIEAEY
FENLSTQLNSIIEADVLLEDVHEVDFIIPAADMDATLIKSIHKYRDDWGSTVEEPLIAIE
GIQINNTDVRVYKNRTSTFVINVGEYKLTKPYYKGDFDELFDNGDETFYLDVVGKCKVNK
YENKSAPAVEIVDIEVTDSFLF
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
ttgatttataaacttataggggagaatgattataaaaatcctatttatacaataataaag
aatagagatattaatgctgatacgttctttaatttaaattcatcagttataaatcattat
tccctattaaataatatggataagggcattaattgtttattgaaacatattgaattaaag
aacaatatatttatccaagttgattctgattgtgatgggtatctatcaagcgcaatccta
attaattacctaaatcaagcctttcctggtactaaagtaaaatggaggcttcatgataaa
aaagatcatggggcctcattggaaacaataccagaagatacgcatttgttaattattcct
gatgcaggaagtaaccaatatgcgttacaccaagagttaaaagagcggggaatagatacg
ttagtacttgatcaccatgaatgtgaaaaagaatcaaatgctgcaatcattataaataac
cagctctcaaatgagtatcagaacaaaagactttcgggtgtgggtattgtttataaattt
tgtaaagctttagatgacaaacttggtttagacttggctgacagcttcttagatttagtt
gcaattgggaatattggcgatgtaattgacttacgggaaccagaaacacgttattatgta
aagaaaggcttaaagcaaattaaaaacccactgataaaagaaatcgtgggcagacaatca
tttttcttagatggaaatataaatatacattttacggcattctctattgttccattcata
aatgcagctatacgctacgcaacaatggaggaaaagacagatatgatgaaggcattacta
ggcagtcaagaatctgtttattatccaaggaagaaaatatacgagcctatagtaaagtca
gtcgccagaagaatttcaaatacgaagaataggcagaaaaaatcacttgaaaaaccagtt
aatgtattaattgagcagcttatcaaagaaaataaaacgaatgataaagtaatagtttta
gatgtttccgatgaattaaaatcctcatttacagggcttgtagctacccaattagctaag
aagtttaagagacccgtaatgttaggcaggaaaacaaaggaagggaaatttggagggtct
gcaagaggatatgaaaaaagtggaattaaagactttaaacaattacttactgaaacaggc
ctttttaacttttgcgaagggcatgcaaatgcatttggttttgaaatagaagctgaatac
tttgaaaacttgagtactcaattaaacagcattattgaagcagatgttttattagaagat
gttcatgaagtagacttcattatccccgctgcagacatggatgctactttaattaaatct
atacataaatatagggacgactggggatcaacagttgaagaacccctaatagcaattgaa
ggtatacaaataaacaatactgatgtaagagtatacaaaaacagaacatcaacgtttgtt
attaatgttggagaatacaaattgactaaaccgtactataaaggcgattttgatgaattg
tttgataatggagacgaaacattttatttagacgttgttggtaaatgcaaggttaataaa
tatgaaaataaatcagctcctgcagtagagatagtggatattgaagtaacagatagcttc
ttattttaa
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