Bacillus amyloliquefaciens TA208: BAMTA208_10440
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Entry
BAMTA208_10440 CDS
T01824
Symbol
ykoV
Name
(GenBank) ATP-dependent DNA ligase subunit
KO
K10979
DNA end-binding protein Ku
Organism
baz
Bacillus amyloliquefaciens TA208
Pathway
baz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
baz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BAMTA208_10440 (ykoV)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baz03400
]
BAMTA208_10440 (ykoV)
DNA repair and recombination proteins [BR:
baz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BAMTA208_10440 (ykoV)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
DUF6058
Phage_ssDNA_bind
Motif
Other DBs
NCBI-ProteinID:
AEB24255
LinkDB
All DBs
Position
2058806..2059687
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AA seq
293 aa
AA seq
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MHTMWKGSISFGLVNIPVKLFAATEDKDIKFRSLHKEDHAPIKYEKICTGCEKSLEPGEI
VKGYEYVKGKYVILTDEDLKDVKQEHEEKAVEIVDFVQLQEIDPIYFNRSYYVGPGDNGT
KAYTLLREALRTTGKIGIASITIRSKQQLAILRVYDNCIVMESIHYPDEVRNAGHVPGVP
EQTAVNEKELQTAITLINELTTEFDPEQYEDTYRKALLAKINDKLEHEEAGVTPAAPGPR
EDVIDLVSALQASIDRTKRPNREQAAPVRTKDTASAGGEGKKRKTTRQKAGTS
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcacacgatgtggaagggttcgatcagcttcggcctcgtcaatatcccggtcaagctc
tttgcggccactgaagataaagatataaaattccgcagtcttcataaagaagaccatgcg
ccgattaaatacgaaaaaatctgtaccggatgtgaaaagagtctggagcctggtgaaatc
gttaaaggctatgagtatgtaaagggaaaatacgtcattttgacagacgaggacctgaaa
gacgtaaaacaggaacatgaagagaaagcggttgaaattgttgactttgtccagctgcaa
gaaattgatccgatttattttaaccggtcttattatgtcgggccgggagataacggcaca
aaagcctatacacttttgcgggaagcgctgaggacgacaggtaaaatcgggattgcctct
attacgatccgttctaagcagcagcttgcgattcttcgcgtgtatgacaactgtatcgtg
atggagtccattcattatccggatgaagtcagaaacgccggacatgtgccgggagttccc
gagcagacggccgtgaatgaaaaagaattgcagacggcgattacgttaataaacgagctg
acaaccgagtttgacccagagcaatacgaagacacataccggaaagccctcctcgccaaa
attaatgataagctcgaacatgaagaagcaggcgtgacaccggctgctcccggtccgcgc
gaagatgtcattgaccttgtcagcgccctgcaggcgagcattgaccggacgaagcggccg
aatcgcgagcaggctgcaccggtgcggacaaaagacactgcgtccgcaggcggcgaaggg
aaaaaacggaaaacgaccagacaaaaagccggaacgtcttaa
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