Bacillus amyloliquefaciens TA208: BAMTA208_11680
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Entry
BAMTA208_11680 CDS
T01824
Symbol
yjcD
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
baz
Bacillus amyloliquefaciens TA208
Pathway
baz03420
Nucleotide excision repair
baz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
baz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAMTA208_11680 (yjcD)
03430 Mismatch repair
BAMTA208_11680 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baz03400
]
BAMTA208_11680 (yjcD)
Enzymes [BR:
baz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAMTA208_11680 (yjcD)
DNA repair and recombination proteins [BR:
baz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BAMTA208_11680 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
BAMTA208_11680 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
Motif
Other DBs
NCBI-ProteinID:
AEB24501
LinkDB
All DBs
Position
2254765..2257050
Genome browser
AA seq
761 aa
AA seq
DB search
MKCARLNNRTIHLHTYSREHYQFLFEEAQKGNIFCAHCDQPVLMRLSILEQPAFYHRQKG
DFTACEKACEAKEPKAEKEKEEYKEAGMFRLPKGKAISESSKPIVSEWKSPKKVPAPEPF
SPTSEAADTSLFPGIGLNREQMRAVTETDGPLLVLAGAGSGKTRVLTARAAHMIEHLGIS
PENMLLVTFTTKAVAEMKERMANEYGLAAGRVSRLVTGTFHSFFYKILYHYDSSKWNGSQ
LLKMEWQREQYVKKALYEENLDEKEFPVDQALQLIGCWKNTYLPHETIPLADDWEKKVYR
LYEHYERQKREKRQFDFDDMAQGCYELFQSRPDILAQYQTRFSHILIDEFQDINPVQYKI
MQLIASPENNLCGVGDDDQSIYAFRGSSPSFILDFQKDYPAAKTIYLTANYRSPHPIVSS
AHAVVKKNKKRYEKTLSAVKDGVHAPVMFFPYDEEEEATMIVSDMKEKIQNGASPDDFAV
LYRTNSAGRAIYERLHQSSIPYHADRGVQTFYSRRIVRQILAYLYASQNEDDTDAVKDLL
PALFLKQSALQTLKALSITEDCTMIKALTKLPDLKPFQIGKIKQIVPFFASIRTMKPVEA
ITFAESKMGFSEYLKKRGNEGNKLEKGSDDLRDVKVAAKKFKTIPDFLAHVDHMRAAENL
KTNENGVELLTIHRSKGLEFNTVYILGAADGSIPHDFALETARQGDPAPLEEERRLLYVA
MTRAMQHLYVSCPANRRGKTARSSRFLEPLLRMDRRSALKI
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatgcgcccgactgaataaccgaacgatacatttacatacatattctagagaacat
taccaattcctttttgaagaagcccaaaaagggaatattttttgcgcacattgtgaccag
cctgtcttgatgcggctttccattttagagcagccggcgttttatcaccggcaaaaggga
gatttcaccgcctgtgaaaaagcatgcgaggcgaaggagccaaaagcggagaaagaaaaa
gaagagtataaggaagccggcatgttccgcctgccgaaaggaaaagccatttccgagagt
tcgaaaccgatcgtctcagaatggaaaagcccgaaaaaagtgcctgcccccgagccgttt
tcaccgacatctgaggcagctgatacatcgctgtttcccggtatcggactgaaccgtgaa
caaatgcgggccgtcacagaaacggacgggcctttgctcgtgcttgccggagctggaagc
ggaaaaacaagggtgctgacggcacgcgctgcccatatgattgaacatctcggcatttca
cctgagaacatgctgcttgtgacctttacgacaaaagccgtggccgaaatgaaagagcgg
atggcaaatgagtacgggctggcagccgggagagtctcccgcctcgtgaccggaacattc
cacagctttttctataaaatactctatcattatgattcttcaaaatggaacggcagccag
ctcttaaaaatggagtggcaaagagagcaatatgtgaaaaaggcgctctatgaagaaaac
ttggatgagaaagagtttcccgtcgaccaagcgcttcagctgatcggctgctggaaaaac
acgtatctccctcatgagacaattccgcttgcggatgactgggagaaaaaagtatacagg
ctctacgaacattacgaacggcagaagcgggaaaaacggcaatttgattttgatgacatg
gctcaaggctgttatgaactgtttcaaagccggcctgatattctcgcacagtatcaaacc
agattttctcatattttaattgatgagtttcaagatattaatcctgtacagtacaaaata
atgcaattgattgcaagccctgagaataacttgtgcggcgtgggggatgatgatcaatcc
atttatgcgttccgcggcagcagcccgtctttcattctcgattttcagaaggattatccg
gcagcaaagaccatttacttaacggcaaattaccgctcgccgcatccgatcgtctcgagt
gcccatgccgtcgtaaagaaaaataaaaaacggtatgaaaaaacactttctgccgtcaaa
gacggtgttcatgcccccgtgatgttttttccttacgatgaggaagaagaagcgactatg
atcgtttccgatatgaaagagaaaattcaaaacggcgcgagccctgacgattttgccgtt
ctttaccggacgaacagcgccggacgggccatttatgaaagactgcatcaatcatcgatt
ccttatcatgccgaccgcggcgtacagacgttttacagccgccgaatcgtccggcagatc
ctcgcctacttatatgcgagtcagaacgaggatgatacggatgcagtgaaagatctgctg
cccgccttatttttaaagcaatccgccctgcaaaccttaaaggcgctgtccatcacagaa
gattgcacgatgattaaggcgctgacgaaactgcctgacctgaagccgtttcaaatcggg
aagatcaagcagatcgttccgtttttcgcaagcatccggacaatgaaacccgttgaagcc
attaccttcgcagaaagcaaaatgggcttttccgagtatttaaaaaaacggggaaacgaa
gggaataaactggaaaaaggctctgatgatctccgtgatgtcaaagtggccgccaaaaaa
ttcaaaaccattccggattttcttgcgcatgtcgatcatatgcgcgccgccgagaatctg
aaaaccaatgaaaacggcgtcgaactgctgaccattcaccgctcgaaaggtcttgaattc
aatacggtctatattttaggcgcggctgacggctcgatccctcatgactttgcgcttgag
acggcgagacagggcgatcccgctccgctcgaggaagaaagacggcttctgtacgtcgca
atgacaagggccatgcagcatttatatgtatcatgtcctgcgaacaggcggggaaaaaca
gcccgcagttcaaggtttctcgagccccttctgcggatggacagacggagcgcactcaag
atataa
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