Bacillus amyloliquefaciens TA208: BAMTA208_12930
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Entry
BAMTA208_12930 CDS
T01824
Symbol
sigA
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
baz
Bacillus amyloliquefaciens TA208
Pathway
baz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
baz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BAMTA208_12930 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baz03021
]
BAMTA208_12930 (sigA)
Transcription machinery [BR:
baz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BAMTA208_12930 (sigA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
HTH_20
DUF2316
Motif
Other DBs
NCBI-ProteinID:
AEB24747
LinkDB
All DBs
Position
complement(2463026..2464147)
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AA seq
373 aa
AA seq
DB search
MADKQTHETETELTLDQVKDQLTETGKKRGVLTYEEIAERMSSFEIESDQMDEYYEFLGE
QGVELISENEETEDPNIQQLAKAEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVNLLSAK
EEITYAQKIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKF
DYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPT
PEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYEL
LKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLR
HPSRSKRLKDFLE
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaacaaacccacgagacagaaacagaacttacactggatcaggtaaaagac
cagctgactgaaactggaaaaaaacgtggcgttttaacatatgaagaaattgctgaacgc
atgtccagctttgaaattgaatcagaccaaatggatgagtattatgaatttttaggagaa
caaggtgttgaattaattagtgaaaatgaagaaacagaagatcctaatattcaacagctt
gccaaagccgaagaagaatttgaccttaatgacctcagcgtaccgcctggcgtaaagatc
aatgatccagtccgcatgtacctcaaggaaatcggacgggtaaatcttctttctgctaaa
gaagaaatcacctacgctcaaaaaattgaagagggtgacgaggaatctaaacgcagattg
gctgaagcaaaccttcgtttagttgtcagcattgctaaacggtatgtcggccgcggcatg
cttttcttagacttaatccaagaaggaaacatgggtctcatgaaagccgtcgaaaagttt
gactaccgtaaaggatataaattcagtacgtatgcaacttggtggatcagacaggcgatt
acacgcgccatcgctgaccaggcgagaacgattcgtatccctgttcacatggtggaaacc
atcaacaaattaatccgtgtgcagcgtcagcttcttcaggatctgggcagagagccgaca
ccggaagagattgctgaagacatggatcttacgcctgaaaaagtccgtgaaatattaaaa
attgcccaagagcctgtttctttagaaacgccgatcggtgaggaagacgattcacatctc
ggtgatttcatcgaagaccaggaagcgacgtctccgtcggatcatgcggcatatgagctt
ttgaaagaacagctggaagacgtgctggatacgttgacggatcgtgaagaaaacgtgctg
cgtctccgtttcggtctggatgacggacgcacaagaacgctggaagaagtcggcaaagtg
tttggagtaacgagagagcgtattcgccaaattgaagcaaaagcgcttcgcaaattgaga
catccgagcagaagcaaacgtctgaaggattttctcgaatag
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