Bdellovibrio bacteriovorus HD100: Bd0235
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Entry
Bd0235 CDS
T00159
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bba
Bdellovibrio bacteriovorus HD100
Pathway
bba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bd0235 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bba03019
]
Bd0235 (rhlE)
Enzymes [BR:
bba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bd0235 (rhlE)
Messenger RNA biogenesis [BR:
bba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bd0235 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
ERCC3_RAD25_C
RhlB
ssDNA-exonuc_C
AAA_22
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAE77894
UniProt:
Q6MR64
LinkDB
All DBs
Position
complement(220904..222421)
Genome browser
AA seq
505 aa
AA seq
DB search
MTTTKFTDLPLIAPLQFSLKEAGYETPTPIQLAAIPVILEGHDLLGIAQTGTGKTAAFSL
PILQNLSKHTRKIEPKSPRCLILTPTRELAIQIHENIEAYSKHLNMKHAVIFGGVGQNPQ
VRALQGGVDILIATPGRLMDLHGQKHLKLDRVEIFVLDEADRMLDMGFMQDIKKILPLLP
QKRHNLFFSATMPHEIQTLANRILVNPKKVEVTPVSSTAEKVEQRVMFVDKPQKLDLLLH
ILKDESLSKVLVFVQMKYGANRVVDRLTKAGVAAAGIHGDKSQNQRQRALEEFKNGDVRV
LVATDIAARGIDIDGITHVINLELPHIPESYVHRIGRTARAGATGISISFCTAEERSFLF
AIEKTTRTKVTVVEDHPFHSTEIANAPVMTVGKAKAILEGQRLQNKAKNRGGGPRRQGGG
APQGGHGGKKAGGKPQGGNKPDHGGKTHTKSEHKSEGAASHKTHSKPAHAKPAHKPAHKS
EGKSAGKSEHAPKKRSFWSRLRNKD
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgactaaatttaccgaccttcctttgattgcccctcttcaattttcacttaaa
gaagcaggatacgaaactccaaccccgattcagttggcagcgatccctgttattcttgaa
gggcacgacctattgggcatcgcccagaccggcaccgggaaaactgcggcgttttctttg
ccgatcctgcaaaacctttccaaacacacacgcaagatcgaaccgaaatccccgcgttgc
ctgattttgactccgacccgcgagctggcgattcagattcacgaaaacatcgaggcttac
agcaaacacctgaacatgaaacacgctgtgatcttcggcggcgtgggacaaaatccccaa
gtgcgcgccctgcaaggtggcgtggacattctgattgcgactccgggccgcctgatggac
ctgcacggacaaaagcacctgaagctggatcgcgtggaaatctttgtactggatgaagcc
gaccgcatgctggacatgggcttcatgcaggatattaaaaagatcctgcccctgcttccg
caaaaacgtcacaacctgttcttctctgcaaccatgccacacgagattcagactttggcc
aacaggattctggtgaatccgaaaaaagtggaagtgactccggtttcttcaacggctgaa
aaagttgaacagcgtgtgatgttcgtagacaaacctcagaagctggatctattgctgcac
attctgaaagacgaatctttgtccaaagtgctggtatttgtgcagatgaaatacggcgcc
aaccgcgtcgttgaccgactgacgaaggcgggcgttgcggccgccggcattcacggcgac
aaatcccagaaccagcgtcagcgtgcgctggaagaattcaaaaacggcgatgtgcgtgtg
ttggtagcgactgacatcgccgcccgtggtattgatatcgacggcattactcacgtgatc
aacctggagcttccgcacattccggaatcctacgttcaccgtatcggaagaaccgcgcgc
gcaggcgctaccggtatttctatttccttctgcactgctgaagaaagatccttcctgttt
gcgattgaaaaaaccacacgcacgaaagtcactgtggtcgaagatcatccgttccattcc
accgaaattgccaacgctccggtgatgaccgtgggtaaagccaaagcgattctggaaggc
cagcgcctgcagaataaggctaaaaatcgcggtggcgggccaagacgtcaaggcggtggc
gcccctcaaggcggtcatggcggaaagaaagcgggaggcaaacctcagggcggcaataag
cctgatcatggtggcaagactcatactaaatccgagcacaaatctgaaggtgccgcttcc
cacaaaactcacagcaaacctgcgcacgcaaaaccggctcacaaacctgctcacaaaagt
gaaggcaagtctgctggcaaaagtgagcacgctcccaagaagcgcagcttctggagccgt
ctgcgcaacaaggactaa
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