Bdellovibrio bacteriovorus HD100: Bd1358
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Entry
Bd1358 CDS
T00159
Name
(GenBank) putative peptidoglycan-binding protein
KO
K21470
L,D-transpeptidase YcbB
Organism
bba
Bdellovibrio bacteriovorus HD100
Brite
KEGG Orthology (KO) [BR:
bba00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
bba01002
]
Bd1358
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
bba01011
]
Bd1358
Peptidases and inhibitors [BR:
bba01002
]
Cysteine peptidases
Family C82
Bd1358
Peptidoglycan biosynthesis and degradation proteins [BR:
bba01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Bd1358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
CAE79250
UniProt:
Q6MNA2
LinkDB
All DBs
Position
complement(1282347..1283927)
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AA seq
526 aa
AA seq
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MEMDTQPVRLFLAITSLILASGLSTAKAQSPPYASAAPTQGQSAIDYLTAVDSLSAASIR
EALLTVWQHGLNPSVYWNDELEQSFLRGTLDADFDRRQILAVYVKALRDVYSGSVNPVGL
ASDIKVKKKDFLTAEQVRLVVLTSQSDAKLALDKMAPQFSVYQSLKMALERLYPLLETGL
WENITPAKKPLSLGKKDPVIIKLKERLRQLGYRIDSMNDTFDQDMLIAINDIQLNLKMKP
DGVISPGGRTWRFFSVSLLDRLSQLQADMEQLRWFPQNLEDRHIFVNTAFSHFMMTDKKN
NISMSFKAINGTAERKTPTLRDRITYLVMNPTWTIPPTVFLNDKVEILKKLDTKGIRKYF
TDNRFEVYTADFSRTIDPTSIDWKSIKSSSVNFYIRQKPSYNNALGVVKFMMTNPYAIYL
HDTNQRDLFGEAQRLRSSGCVRLEKPLDLAEYLLAGTQWSRPQIENFVVKEGQLVDKETR
VDLKEPMPVYLVPVTSQMNSDGVIRFVEDVYGHNQLILSQVKGLGR
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggatacgcaacctgttcgtttatttcttgcgatcacgtctttgattttggca
agcgggctttctacggcaaaggcccaaagtcccccctatgcttctgcggcgccaacgcaa
ggtcaaagtgcgattgattatttaaccgctgtcgacagcttaagtgcggcttcaatccgc
gaagctctgttgacggtgtggcagcatggactgaatccttccgtctattggaacgacgaa
ctggagcagtccttcctgcgcggaaccctggacgcggacttcgaccggcgccaaattctg
gctgtctatgtgaaggccctgcgtgacgtttacagcggatcggtcaatccggtaggcctg
gcttcagatatcaaagtcaaaaaaaaggacttcctgacggccgaacaggttcgccttgtc
gtcctgaccagccagagcgatgcaaaactggcccttgataaaatggccccccagttttcc
gtctatcagtccctgaaaatggcgctggaaagactgtatcctttgctggaaaccggattg
tgggaaaacatcaccccagcaaagaagccgttgtcactgggtaaaaaagatcccgtcatc
atcaaactgaaagaacgtttgcgtcagttgggttatcgcatcgacagcatgaacgacacg
tttgatcaggacatgctgatagcgatcaatgacattcaactaaacttgaaaatgaaaccg
gatggagtgatttcacccggcggccgcacctggaggttcttcagcgtttccctgttggac
cgactcagtcaactgcaagcggatatggagcaactgcgctggttcccgcagaatcttgaa
gaccgtcatattttcgtgaatacggcgttttcccacttcatgatgacggataaaaagaac
aacatctcgatgagctttaaggcgatcaacggcactgcggaacgcaagacgcccacgctt
cgggatcgcatcacctatttggtgatgaacccgacatggacaattccacccacggtgttc
ctgaacgataaagttgaaattctgaagaagctcgacaccaagggcattcgcaagtatttc
actgataacagatttgaagtgtacactgctgactttagccgaaccatcgacccgaccagc
attgactggaagtcgatcaagtcctcgagcgtgaacttctatatcaggcagaaaccgagc
tacaataatgccctgggcgttgtgaagtttatgatgacgaatccttatgccatctatctg
cacgacaccaatcagcgcgacttgttcggcgaagcccagcgcctgcgcagttcgggatgt
gtgcgcctggaaaaaccgctggatctggccgaatatctgcttgcaggaacgcaatggtcc
cggccgcagattgaaaacttcgtggttaaagaaggtcaattggttgataaagaaacccgt
gtggacctgaaagaaccgatgccggtttatttagtacctgtaacttcccaaatgaactcg
gacggtgttatccgttttgtggaagacgtttacggacacaatcaattaattttatctcaa
gtcaaaggattaggacggtaa
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