Bdellovibrio bacteriovorus HD100: Bd1551
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Entry
Bd1551 CDS
T00159
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bba
Bdellovibrio bacteriovorus HD100
Pathway
bba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bd1551 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bba03019
]
Bd1551 (pnp)
03016 Transfer RNA biogenesis [BR:
bba03016
]
Bd1551 (pnp)
Enzymes [BR:
bba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Bd1551 (pnp)
Messenger RNA biogenesis [BR:
bba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Bd1551 (pnp)
Transfer RNA biogenesis [BR:
bba03016
]
Prokaryotic type
tRNA degradation factors
Bd1551 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_PDCD11
S1_RRP5
KH_2
S1_TP0910
S1_2
OB_RRP5_4th
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
CAE79431
UniProt:
Q6MMS2
LinkDB
All DBs
Position
1476606..1478699
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AA seq
697 aa
AA seq
DB search
MKTTVTTSVGGKQITIETGRLAKQADGAALVSSGNNMVLVTATSSKKASELDFFPLTVEY
IEKFYATGKIPGGYFKREAKPTNDAVLIARLIDRPIRPVFPEGYRHETQIVATVLSADGA
FPLEILASLGASAALHCSDIPFNGPTAAVQIARVDGQFVANPTPQQMEKSDMDMIVAGTR
NGLLMVEGETKFISEADALAALKFGHQSLIPLLNAQDELREKAGSVAKRAFTAPSIDADF
KAKAESLLRPKIAAALSIKEKQDRYAAANEAAAEAEKALLADIADKELLKQRKKELNSIV
EDLKYQEARSMILDRAVRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLG
TADDEQMVDSLLGLQKRKFMLHYNFPPYSVGEVGRMSGTSRREIGHGNLAERAIKAVLPD
FEKFPYTIRIVSEVLESNGSSSMGTVCSGIMALLDAGVPLKGNVAGVAMGLIKEGDRVAV
LTDILGDEDHLGDMDFKVAGSPAGITALQMDIKIDSVSFEVMEQALAQAKEGRAHILNEM
EKVMKVPRGQISEFAPRIETIKIKPDKIREVIGSGGKVIRGITEATGVKIEIQDDGTINI
ASADPEATKKAIAMINDIIAEAEVGKTYKGRIVKIAEFGAFVEILPNTQGLLHISEISNE
RVRAVSDVLKEGEIIDVKVLEVDRSGRVKLSRKALLQ
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgactgtcacaacatcggtgggtggaaaacaaattaccatcgaaacaggccgt
ttggcgaaacaagcggatggcgccgctttggtaagctccggtaacaacatggttcttgtt
actgcaacttcctcaaaaaaagcctctgaactggatttcttccctctgactgttgagtac
attgagaagttctacgcaacaggcaaaatcccaggtggttacttcaaacgtgaagcaaaa
ccaaccaacgacgcggttctgatcgctcgtcttatcgaccgtccaatccgccctgtattc
cctgaaggctaccgccacgaaacacaaatcgttgcgacggtgttgtctgcggatggcgca
ttcccactggaaattctagcgagccttggtgcatccgcggctttgcattgctctgacatt
ccattcaacggcccgacagcagctgtgcaaatcgcacgcgttgacggtcagttcgttgcc
aatccaactccacagcagatggaaaaatctgacatggacatgatcgttgcgggtactcgc
aatggtttgttgatggttgaaggtgaaacgaaattcatctctgaagcagacgccttggca
gccttgaaattcggtcaccagtctttgattcctcttctgaacgcacaggatgagttgcgt
gaaaaagccggttctgtggcgaaacgcgctttcactgctccatccatcgatgcagacttc
aaagccaaagctgaaagcctgttgagacctaaaattgcggcggctctttccatcaaggaa
aaacaagaccgttatgcagctgccaacgaagcagcagcagaagctgaaaaagctcttctt
gctgacatcgctgacaaagagcttttgaagcagcgtaaaaaagaactgaactctatcgtt
gaagatctgaaataccaggaagctcgttccatgattctggatcgcgctgttcgtatcgac
ggtcgtgacgtgaaaactgttcgtcctatcgcgaacgaagtgggtatcctgcctcgcgct
cacggttccggcttgttcacccgtggtgaaactcaagtattgggcactgtgactttgggt
acggctgatgacgaacaaatggtggattcactgttgggtcttcagaagcgcaagttcatg
cttcactacaacttccctccatactctgtgggtgaagtgggtcgtatgtccggtaccagc
cgtcgtgagatcggtcacggtaacctggctgagcgcgcgatcaaagcggttcttccagac
ttcgaaaaattcccttacacaatccgtatcgtgtctgaagttttggaatccaatggttcc
tcttccatgggtactgtttgctccggtatcatggcattgcttgacgccggtgttcctttg
aaaggcaacgttgccggtgtggcaatggggctgatcaaggaaggtgaccgcgttgcggtt
ctgacggacatccttggtgacgaagatcacctgggtgacatggacttcaaagtggcgggt
tctcctgcgggtatcactgctttgcagatggatatcaaaattgactctgtttccttcgaa
gtgatggagcaggctttggcgcaagctaaagaaggccgcgctcacatcctgaacgaaatg
gaaaaagtgatgaaggttcctcgtggtcagatctctgaatttgcacctcgtatcgaaacc
atcaaaatcaagccagacaagatccgtgaagtgatcggctccggtggtaaagtgatccgt
ggtatcactgaagctactggcgttaagatcgagatccaggacgacggtactatcaacatc
gcgtctgctgatccggaagcaaccaagaaagcaattgcaatgatcaacgacatcatcgct
gaagctgaagtgggcaagacctacaaaggccgcatcgtgaaaatcgctgagttcggtgct
ttcgttgaaatccttccgaacacacaaggtcttttgcacatctctgaaatctccaacgaa
cgtgtacgcgcagtttctgacgtactaaaagaaggtgaaatcatcgatgtgaaagttctt
gaagtggaccgttctggtcgcgtcaagctttcccgcaaggctttgctacagtaa
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