Bdellovibrio bacteriovorus HD100: Bd2232
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Entry
Bd2232 CDS
T00159
Symbol
recJ
Name
(GenBank) single-strand DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bba
Bdellovibrio bacteriovorus HD100
Pathway
bba03410
Base excision repair
bba03430
Mismatch repair
bba03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Bd2232 (recJ)
03430 Mismatch repair
Bd2232 (recJ)
03440 Homologous recombination
Bd2232 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bba03400
]
Bd2232 (recJ)
DNA repair and recombination proteins [BR:
bba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Bd2232 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Bd2232 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Bd2232 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CAE80063
UniProt:
Q6MKZ4
LinkDB
All DBs
Position
complement(2129645..2131372)
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AA seq
575 aa
AA seq
DB search
MNPLWTLRESENEPVIPSNVEGQWPKLITKVLAARGFAEASHVEKLLFPKLADLKDPLVL
KGMSQALERLGQAYLNKEKICIYADFDLDGTSGLALLKTGMLALGFPDVLHYQPKRLAEG
YGFHAHAVEELKKQGVSLIITVDVGITAHAAIDKANELGVDVILTDHHLPADTIPSAFVV
VNPNQGDCPSGLGYLCGAGVAFYLLRGLKRHFHDHPQLPKNNWDLKEVLDYFTIGTLTDM
VPLVDDNRVLVKHGLVKLAETKRAGLRALLEELDLTGRPLTSQDVAIRFAPKLNALSRME
SGILPIDIFLLDDPSQARDMVRQVMKNNSTRVQLQGDAEAEAQQLLQGWPHQDFVFVASR
NFHRGVLGLIATKLTQVYNKPAFVGAVGDDGMIVGSARLPQGQEACLVEAMSSAQELLSR
FGGHSAAAGFEIAETKVSTFVGKLADHFSDLREKPKPLEIFYDVEAGLSEVSEALMKWYD
FVGPFGAGFSIPLIHFTNVQVLSKRELKGGHLRLKIADADGGASAEALLFTPTPRQLDTL
TNVPGFYHVLGELQWNYFAGQKTVQILIRDLKAAT
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctttgtggacgctgcgggaatctgaaaatgagccagtcatcccctcgaatgtc
gaggggcaatggccgaagctcatcacgaaggttcttgcagcccgcggttttgccgaagct
tcccatgttgagaagcttcttttcccgaagctcgctgatttgaaagatcctcttgtactt
aaggggatgtctcaagctcttgagcgcctgggtcaggcgtacctgaataaagaaaaaatc
tgcatctatgctgacttcgatctggatggaacttccggtctggcgttgctgaaaaccggc
atgctggccttgggtttccccgatgttttgcactatcagcccaaacgtctggctgaaggt
tacggcttccatgcccatgctgtggaagaactgaaaaagcaaggtgtcagtctgatcatc
actgtagacgttggtatcaccgcgcacgcggcgattgataaagccaatgaactgggtgtg
gatgttattctgaccgaccaccatttgcctgccgataccattccttctgcctttgtggtg
gtgaatcccaatcaaggcgattgtccgtcgggattgggttatctttgtggtgccggtgtt
gccttctatcttttgcgtggattgaaacgtcacttccacgatcatccacaactgcctaaa
aacaattgggatttaaaagaggtactagattactttaccattggcactctgacagacatg
gttccgctggtggatgacaaccgcgtgctggtaaaacacggcctggtgaagctggctgaa
accaagcgcgccggacttcgagcattgcttgaagaattggatctgaccggacgcccattg
accagtcaggatgtggcaattcgttttgctccaaaactgaatgcgctttcgcgcatggaa
tccggcattcttccgattgatatattcctgttggatgatccaagccaagcccgcgatatg
gttcgacaagtgatgaagaataattccacccgcgtgcagttgcagggggatgcggaagct
gaagctcaacaattacttcaaggctggcctcatcaggatttcgtctttgtggcttccaga
aatttccatcgaggcgttcttggattgatcgcgaccaagctgacccaagtctataacaaa
ccggcctttgtgggtgcggtgggtgatgatggcatgatcgtgggcagtgcccgtttgcca
caaggtcaggaagcctgcctggtggaagcgatgtcttcggcgcaggaattgctcagtcgt
ttcggaggtcactcggccgcggcgggttttgaaattgctgaaaccaaggtttccactttc
gtggggaaactagcggatcatttctcggatttgcgcgaaaagccaaaaccgcttgaaatc
ttctatgatgttgaagccgggctttccgaagtcagcgaagctctgatgaagtggtatgat
ttcgtcggtccgttcggggcggggttctcgattcctttgattcattttaccaatgttcag
gttttgtccaagcgcgagctgaagggcggtcatcttcgattgaagattgctgatgccgat
ggcggggcttccgcggaagctttgttgttcacgccgacaccgcgccagctggataccttg
acgaatgtgccagggttctaccatgttctgggtgaactgcagtggaactattttgccggg
caaaagacagttcagattcttattcgggatttaaaggcagccacatga
DBGET
integrated database retrieval system
