Bdellovibrio bacteriovorus HD100: Bd2908
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Entry
Bd2908 CDS
T00159
Symbol
ycbB
Name
(GenBank) putative amidase
KO
K21470
L,D-transpeptidase YcbB
Organism
bba
Bdellovibrio bacteriovorus HD100
Brite
KEGG Orthology (KO) [BR:
bba00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
bba01002
]
Bd2908 (ycbB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
bba01011
]
Bd2908 (ycbB)
Peptidases and inhibitors [BR:
bba01002
]
Cysteine peptidases
Family C82
Bd2908 (ycbB)
Peptidoglycan biosynthesis and degradation proteins [BR:
bba01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Bd2908 (ycbB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Put_DNA-bind_N
Motif
Other DBs
NCBI-ProteinID:
CAE80686
UniProt:
Q6MJ75
LinkDB
All DBs
Position
complement(2818222..2819754)
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AA seq
510 aa
AA seq
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MRVAVSSLVLTLFMLVSATASAAVDYSSALSQLSLSEMRQAALGIWKHGLNPKIYWNDRL
ETLYRNGGNLEKTLRPQANQAFLRMLRDLQIGSVDPVNAGRDVKLVRRDFLTPKQFQMIA
LAAGNNAQSFVDLVAPQNAPYIGVQAAIQKIYPHCIDGTWQDIVPVTTPLRLYSIHPVIR
EIKSRLALLGYTMRNMDDRFDGDLLKAVTDIQWNMRIRPDGEISPKGKVWSFLSVSCMDR
VRQIQVDMEKMRWFPQYFEKKYIFVNLAMSYFIMMDQSTDWPRVMSFRTINGRPARKSPT
MRDEIVNVIINPFWVVPPTIFYEDKVNDLKDLTSEQIREYFDSHHYEAWVGGFRRKVDPT
TIDWKGIAAGTVDPDIIIRQLPHLGNALGVLKFDLTNSFAIYLHDTNQRELFDTPMRQLS
SGCVRLEKPLDLAEYLLEDTPWDRQTIASMMARPGEVVAKPTEIPVPSYKRMPVYTAYLT
SMMNSDEVVRFVDDIYGQNPAVLRHLDGRF
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgcgagtggcagtgtcgtcactggttcttactttatttatgcttgtttccgcgaccgca
agcgcagccgttgactatagctcggcattaagccaactcagtctttcggaaatgcgccag
gccgctttgggaatctggaagcatggtttgaacccgaaaatttactggaatgatcgactg
gaaactttgtatcgcaacggggggaatctggaaaagactctgcgccctcaggccaaccag
gcgtttttgcgtatgttgcgtgacctgcaaattggcagtgtcgatccggtgaatgcgggt
cgtgatgtaaagctggtgcgaagggattttttgacgcccaaacagtttcagatgatcgca
ttggcggcgggcaataatgcccaaagctttgtggatctggtggctccgcagaacgctcct
tatataggtgtgcaggcggcgatccagaagatttatccacactgtatcgatggcacctgg
caggacattgtgccggtgacgacacctttgcgattgtattcgattcatccggtgattcgc
gagatcaagagccggctggcgctgttgggatacacgatgaggaacatggatgatcgcttt
gatggcgatctgttgaaggctgtgacagatattcagtggaatatgaggatccgaccggat
ggtgaaatttcgcccaaaggcaaggtctggtctttcctgagtgtgtcttgcatggaccga
gtgcgccagattcaggtggacatggaaaagatgcgctggtttccacagtatttcgagaaa
aagtacatcttcgtgaatctggcgatgtcgtatttcattatgatggatcagtcgaccgac
tggccccgggtgatgagcttccgcaccatcaacggacgcccggcgcgcaagtctccgacg
atgcgggatgaaatcgtcaacgtgatcatcaatccattttgggtggtgccgccgacgatt
ttttatgaggacaaggtcaacgatctgaaggatctgaccagtgagcagattcgggagtac
tttgactcccaccattatgaggcgtgggttggtggcttccgccgcaaggtggatccgacc
acgattgactggaaggggattgcggctggtacggtggacccggatattatcatccggcag
cttccacatctgggaaatgccctgggggtgttgaagtttgatttgaccaacagctttgcg
atttatctgcatgataccaatcagcgcgagttgtttgatacgccgatgcgccagctcagt
tccggttgtgtgcgcctggaaaaaccattggatctggcggaataccttctggaggacact
ccatgggaccgtcagacgatagcttcgatgatggcccggcctggagaggtggtggcaaaa
cccaccgagattccggtgccgtcttacaagcgcatgccggtgtacacggcctatttgacc
tcgatgatgaattcagacgaagtggtgcgctttgtggatgatatctacggacagaacccg
gctgttctgcggcacttggatggacgtttttag
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