Bdellovibrio bacteriovorus HD100: Bd3421
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Entry
Bd3421 CDS
T00159
Symbol
yfhD
Name
(GenBank) putative periplasmic binding transport protein
KO
K18691
peptidoglycan lytic transglycosylase F [EC:
4.2.2.29
]
Organism
bba
Bdellovibrio bacteriovorus HD100
Brite
KEGG Orthology (KO) [BR:
bba00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
bba01011
]
Bd3421 (yfhD)
Enzymes [BR:
bba01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Bd3421 (yfhD)
Peptidoglycan biosynthesis and degradation proteins [BR:
bba01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Bd3421 (yfhD)
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Gene cluster
GFIT
Motif
Pfam:
SLT
SBP_bac_3
NMT1
Motif
Other DBs
NCBI-ProteinID:
CAE78219
UniProt:
Q6MHW3
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All DBs
Position
3333192..3334616
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AA seq
474 aa
AA seq
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MLALAARQRIALPHAMGTILRLRQKIARAFLIGGLGFTTVAMNGCDAMIMDEQESLAQVQ
SKGEIVVLTTQSPLIYSQPKRGGAFGIDHDLLENFASRYNLKLRYVVLPDEDSVLRALSK
GEGDIAAARLRTPHNMTGFLTGPAYEETYLSLYCHKKAQIQNIQDLNGKNISLLQKDNYL
GLSQRLTQLSPQVKVEIQENIKTQDLISSLAQRKNDCVIAENFSGDFYARYHTSIEKVTD
LTAPYSLSWQLSPDNSSLLHLMQHWYQQASREDEIMRILDRYKTYLTQLDKRDIAQFFKK
IRTTLPTYKEAFRDAGREHNLPWQLIASVAYQESHWNPEARSFTGVRGLMQLTTDTALHV
GIEDRTDPLQSIWGGSKYLRSLMDRVPSHLNYKDRLALALAAYNVGWAHLKDAQKLAEKM
GRNPYSWRHMREILPLLADPEYAAEFEYGPARGYETVDFVERVKSFYNLMNAAG
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcactggcggcgcgccaaaggatagcactgccccacgctatgggaacgatttta
agattaagacagaaaatcgcccgggcctttctaatcggaggccttgggtttaccacggtc
gccatgaatggctgcgacgccatgattatggacgaacaggagagcttggctcaggttcag
tccaaaggtgaaatcgtggttctgaccacgcaaagtcctcttatatatagtcagcccaaa
cgcggcggggctttcgggatcgatcacgatcttttggaaaacttcgccagccgctacaac
cttaaactgaggtacgtggtacttccggatgaggactcggtgttgcgggcgctgtctaaa
ggcgaaggggatatcgccgcagcccgcttgaggactcctcacaatatgaccggcttcctg
accggccctgcatacgaagaaacttatcttagcctttactgccacaagaaggcccagatc
caaaacatccaggatctgaatggcaaaaacatctcgctgctgcaaaaagacaattacctg
ggtttgtcgcaacgtctgacccagctttcaccgcaagtgaaggtggagattcaggaaaac
ataaagacccaggatctgatctcaagtcttgctcaacgcaaaaacgactgtgtcatcgca
gaaaacttcagcggtgatttctatgcccgctatcacacctcgattgaaaaggtcaccgac
ctgacagccccctactctttgagctggcagctgtccccggacaactcaagtctgctgcat
ctgatgcaacactggtatcagcaggcttcccgcgaagacgaaatcatgcgcatcctggat
cgctacaaaacgtacctgacccagttggataagcgcgatatcgcccagttcttcaaaaaa
atccgcacgactttgccgacttataaagaagccttccgtgatgctggtcgcgaacacaat
ctgccttggcagctgatcgcctcggtggcttatcaggaatcgcactggaatccggaagcc
cgcagcttcaccggagtgcgtggattgatgcagttgacgactgacaccgctttgcatgtc
ggtattgaagaccgcaccgatcctttgcaaagcatctggggcggatccaaatatctgcgc
tccctgatggaccgcgtgccttcccacttgaattacaaagaccgtctggctttggcactg
gctgcatacaatgtcggctgggctcacctaaaagacgcgcaaaagctggccgaaaagatg
ggccgcaatccttactcctggagacacatgcgtgagattctgccattgctggcggatccg
gaatacgccgcggagtttgaatacggaccggctcgtggttatgagacggtggacttcgta
gaacgagtcaaatccttctataatctgatgaacgcggccggatga
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