Bdellovibrio bacteriovorus HD100: Bd3461
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Entry
Bd3461 CDS
T00159
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bba
Bdellovibrio bacteriovorus HD100
Pathway
bba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bd3461 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bba03019
]
Bd3461 (rhlB)
Enzymes [BR:
bba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bd3461 (rhlB)
Messenger RNA biogenesis [BR:
bba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bd3461 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
CAE78254
UniProt:
Q6MHS8
LinkDB
All DBs
Position
complement(3370568..3372217)
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AA seq
549 aa
AA seq
DB search
MKFSELNLDSQLLSAIQKLNYDDCTPIQEQAIPPVLDGKDVAGLAQTGTGKTAAFVIPVM
ERILRARPIQGEVTEEQKALIEKRAYKDWKPQNFVLILVPTRELAEQVQDNINKLSVDSG
LRGFAIYGGTGYDKQKEALKNGVEFIVATPGRLIDLYKEHLVDLKQVRAIVFDEADRMFD
MGFKDDMKYILQRVPRERQLLVFSATLNFDVLNTIYQFGSEPVEINISRDQAKADNVKDQ
IFHVGSDEKPQHLLSLLKVHNPKQAIIFTNFKMSVERIAKFLVENGVPAMAISSLLTQAQ
RNRVIEQFKAENDMNVLVATDVAARGLDIKGVDMVVNYELPMDSESYVHRIGRTGRAGTT
GQAFSLVGDKDIESLGRIEDYLKHKIEIGYLENDQLLKDFKPMTSSYDGHYPKSLDRARA
PREGGRGGDRGPRREGDRGPRRERGDRGPRQDRGPRPEGQQKSAQGAGAQQTQGGGQRPD
SRPRRQEGGPKRPHDAKRGEQRQPRNDQARKPHGQQQPRQGASAKKRVPMAAQKSIGQKV
AGFFKRLFS
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattctcagaattgaatttagattcccaattgttatctgcaatccagaagttgaac
tatgatgattgcacgccgatccaggaacaggccatcccgccggttttggacggtaaagat
gttgccggccttgctcagaccggaacaggtaaaaccgctgctttcgtgattccagtgatg
gaacgtatcctcagagcccgcccgatccagggtgaggtgaccgaagagcaaaaagccctg
atcgaaaaaagagcttacaaagactggaagcctcagaacttcgtattgatcctggttccc
acgcgcgagttggcagagcaggttcaggacaacatcaacaaactgagcgttgattccggc
cttcgtggtttcgcgatttatggcggtacaggttacgacaaacaaaaagaggcgttgaag
aacggtgttgaattcatcgtggcgactccgggacgtttgatcgatctgtacaaagaacat
ctggtggacctgaaacaggttcgtgcgatcgtcttcgatgaagcggacagaatgtttgat
atgggcttcaaggacgacatgaagtacatccttcagcgcgttcctcgtgagcgtcagttg
ctggtgttcagtgcgactttgaactttgatgttttgaacaccatctatcagttcggttcc
gagccggtggaaatcaacatcagccgtgaccaggccaaagcggacaacgtgaaagaccag
atcttccacgtgggctctgatgaaaagcctcagcatcttctgtctttgctgaaagtgcac
aatccaaaacaagccatcatcttcaccaacttcaaaatgagcgtcgagcgcatcgcgaag
ttcctggtcgaaaacggtgtcccagccatggcgatttcaagccttctgacccaggctcag
cgcaaccgcgtgattgagcagttcaaggctgaaaacgacatgaacgtgctggtggcaacg
gatgttgcggcccgcggtctggacatcaaaggcgtggacatggttgtgaactatgaactg
ccgatggactctgaatcctatgttcaccgtatcggtcgtaccggccgtgcgggcacaacg
ggtcaggcgttttctttggtgggcgacaaggacatcgagtctttgggtcgcattgaagat
tatctgaaacacaaaatcgaaatcggctatctggaaaacgaccagttgctgaaagacttt
aaaccgatgacttccagctatgacggtcattatccaaagtctctggaccgtgcgcgtgcg
cctcgtgaaggtggacgtggtggtgacagaggtcctcgccgtgaaggtgaccgtggtcct
cgtcgcgagcgcggtgatcgcggacctcgtcaggatcgcggtcctcgtccagagggtcag
cagaaatctgcacagggtgcaggtgctcagcagactcaaggtggcggtcagcgtccggac
agccgtccaagaagacaagagggtggtccgaagcgtcctcacgatgcaaaacgtggcgaa
caaagacaaccaagaaacgaccaggctcgcaagccgcacggtcaacaacagccgcgccag
ggggcttctgcaaagaagcgtgtgccaatggcagcgcaaaaatccatcggccagaaggtc
gcaggattcttcaaacgtctgttctcttaa
DBGET
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