Bdellovibrio bacteriovorus 109J: EP01_00230
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Entry
EP01_00230 CDS
T03079
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bbac
Bdellovibrio bacteriovorus 109J
Pathway
bbac03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbac00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EP01_00230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbac03021
]
EP01_00230
03400 DNA repair and recombination proteins [BR:
bbac03400
]
EP01_00230
Enzymes [BR:
bbac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EP01_00230
Transcription machinery [BR:
bbac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EP01_00230
DNA repair and recombination proteins [BR:
bbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EP01_00230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AHZ83381
LinkDB
All DBs
Position
complement(31426..35553)
Genome browser
AA seq
1375 aa
AA seq
DB search
MRDLLNFFDKPKDPLSFDAVRVSLASPEMIREWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTQTKVRRERLGHIELATPVAHIWFLRSL
PSRIGNLLNLSLKDVEKVLYCEAHVVIDPMETTLEEGQVLTEEALQAALNEFGPSFKYGM
GGEAVRDLLKKIDPEYLSRKLRLEVKDTKSEAGIKKLTKRLRVVEAFKGSINKPEWMMLE
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRMLQ
EAVDALLDNGRRGKTFTGPNKRPLRSLSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFVYNKLEEKGLATTIKQAKRLVDQETVEVWDILADVVKEHP
VLLNRAPTLHRLGIQAFEPVLHEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSVESQVEA
RVLMMSTNNILSPANGKPIINPSQDIVLGMYWLTRMRPGAKGSGKAFSSVQEAQYAFETG
LVDLQAVCKVRINGTLQETTVGRAILSDIVPKEVPFNEVNVTMGKKQIAALIDKTFRLAG
AKATCILADKIMEYGFKYSTAAGMSIGIDDMVIPAAKAPMIADAEKQVTEIQQQYDEGLI
TDGERYNKVVDIWAQTADKIAKEGMNAIEKQTFNVNGKEVVGPSFNPIYIMADSGARGSA
AQIRQLGGMRGLMAKPSGEIIETPITANFREGLTVIQYFISTHGARKGLADTALKTANSG
YLTRRLVDVAQDVVVSEIDCGVEDGLEITPIYEAGEIVQNIGDRILGRTALKDVVDAATN
EVVVRANQEITENDVKIIEGRGIDKVDIRSALICQSKRGVCVKCYGRDLSRGATVNLGET
VGIIAAQSIGEPGTQLTMRTFHLGGAASRAVEQSVHTSRYDGVVKLQNVHAVTNRNGKLT
VMNRNGSALVIDEAGRERENFKLVYGAVLNFKEGDKVAKGQTVAEWDPYSNPIIAEVSAK
IQYQDIEEGSTMQEQVDAVTGFATKVIMESKSSDVKPTVFLVDGAGKTLNLPGRDIPARY
LIPVGAQLLVADQQEVHAGDVIAKMHREASKTKDITGGLPRVAELFEARKPKEAAIISEI
DGYVTFGKDVKGKQRVIVTPEVGEQKEYLIPKGKHVAVREGEYVRAGEALMDGPTNPHDI
LAVLGAKALSAYLVDEIQEVYRLQGVGINDKHIEVIVRQMLRKVEIRDAGDSRFLAGEQV
ERYAYMEENERINKEGGQPATCSPLLLGITKVSLSTDSWISAASFQETTKVLTEAAINSR
TDHLRGLKENIIMGRLIPAGTGLTSYKRWKVSVHEDDDIGFVALPGMTSSVQPQG
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
ttgagagacttgttgaattttttcgataaaccaaaagatccactttcgtttgacgccgta
cgagtttcgttggcgtcacctgaaatgattcgtgaatggtcatttggtgaagttaagaag
ccagaaactatcaactatcgtactttcaagcctgagcgtgacggcttgttctgtgcgaaa
atcttcggtccgatcaaggactatgagtgcttgtgcggtaagtacaaacgtatgaagtac
cgtggcgtcgtctgtgaaaagtgcggcgttgaagtgactcagaccaaggttcgccgtgag
cgccttggtcacattgaattggcaactccagtagcccatatctggttcctgcgttctttg
ccttctcgtattggtaaccttttgaatctttctttgaaagacgttgaaaaggtcctttac
tgtgaagcacacgtggttatcgatccaatggaaactacattggaagaaggccaggtactg
actgaagaagcattgcaagcggctctgaatgagttcggcccatccttcaaatacggaatg
ggtggcgaggcagttcgtgatcttttgaaaaaaatcgatcctgaatacctttcccgcaaa
cttcgcttggaagttaaagacaccaagtctgaagctggtatcaaaaaattgactaaacgc
ctgcgcgttgttgaggccttcaaaggttccatcaacaagccagagtggatgatgttggaa
gcacttccggttcttcctcctgatcttcgtccattggtacctcttgatggtggccgtttc
gcgacgtctgacctgaatgacctgtaccgccgtgttatcaatcgtaacaaccgtttgaaa
cgtcttcaggagctgaacgctccagacatcatcatccgaaacgaaaagcgtatgcttcaa
gaagcagtggacgctttgttggataacggtcgtcgcggtaagaccttcactggtccgaac
aaacgtcctcttcgctccctttctgatatgttgaaaggtaagcagggtcgtttccgtcaa
aaccttttgggtaaacgtgtagactactctggtcgttccgttatcaccgttggacctact
ctgagacttcatcagtgcggtcttccgaagaaaatggctctcgagttgttcaaaccattc
gtttacaacaaacttgaagaaaaaggtcttgcgaccactatcaaacaagccaaacgcttg
gttgatcaggaaacagttgaagtttgggatatccttgctgacgtggtgaaagagcacccg
gttcttctgaaccgtgcaccaaccctgcacagacttggtatccaggcgttcgagcctgtt
cttcacgaaggtaaagctatccagctgcacccgttggtatgtacggcgttcaatgccgac
ttcgacggtgaccagatggcagttcacgttccactttctgtggaatcccaggttgaagca
cgcgttctgatgatgtccacgaacaacatcctttctcctgccaacggtaaacctatcatc
aatccttcccaggatatcgtgttgggtatgtactggttgactcgtatgcgtccgggcgcc
aaaggatcaggcaaagccttctccagcgttcaggaagctcaatacgcgtttgaaacaggt
ctggtagaccttcaggcagtatgtaaggttcgtatcaacggaactctgcaagagaccaca
gtgggtcgtgcaatcctttctgatatcgttcctaaagaagttccgttcaacgaagtgaac
gtgacaatgggtaaaaaacagatcgcggccctgatcgacaagactttccgtcttgccggt
gcaaaagcgacctgcatccttgctgacaagatcatggaatacggcttcaagtattcaact
gcagcaggtatgtccatcggtatcgatgacatggtgatcccggcggcgaaagctccgatg
atcgctgacgcagaaaaacaagttactgagattcagcagcagtatgacgaaggtttgatc
acagatggtgagcgctacaataaagtggtcgacatctgggcgcagactgcagacaaaatt
gctaaagaaggtatgaacgcgatcgaaaagcaaacattcaacgtgaatggtaaagaggtt
gtgggtccttccttcaatccaatttacatcatggctgactccggagcccgtggttccgct
gctcagatccgtcagttgggtggtatgcgtggtctgatggcgaaaccttccggtgagatc
atcgagactccgatcactgcaaacttccgtgaaggtttgacagttatccagtacttcatc
tccacgcacggtgcgcgtaaaggtttggccgataccgcattgaaaacagcgaactccggt
tacctgactcgtcgtttggttgacgttgctcaggacgttgttgtgtccgagatcgattgc
ggtgttgaagatggtttggaaatcactccgatttacgaagcgggtgaaatcgtacaaaac
atcggtgaccgtatcctgggccgtacagctttgaaagacgttgttgatgcagcgacaaac
gaagttgtggttcgtgctaaccaggaaatcactgaaaatgacgttaagatcatcgaaggc
cgtggtatcgacaaagtcgacatccgttctgctcttatctgtcagtctaaacgcggtgtt
tgcgtgaagtgctacggacgtgatttgtcccgtggtgcgactgtgaacctgggtgaaaca
gtgggtattatcgccgctcaatccatcggtgagccgggtacccagttgacgatgagaacg
ttccacttgggtggtgcggcttctcgtgcggttgaacaatctgttcacacatcccgttat
gacggtgttgttaaactacaaaacgttcacgcagtgacgaaccgtaacggtaagttgact
gtgatgaatcgtaacggttctgctcttgtgattgacgaagcaggtcgtgagcgtgaaaac
ttcaagctcgtatacggcgctgttttgaacttcaaagaaggcgacaaagttgccaaaggt
cagactgttgcggaatgggatccatattcgaatccaatcatcgcagaggtttctgcgaag
atccaataccaggatatcgaagaaggttccacaatgcaggagcaagtggatgcggtaact
ggtttcgcgaccaaagttatcatggaatccaagtcttccgatgttaaaccaactgtcttc
ctagtggatggcgctggtaaaacattgaatcttcctggtcgtgacatcccggctcgttac
ctgatcccagttggggctcagttgctagttgcggatcagcaggaagtgcatgcgggtgac
gtaatcgcgaagatgcaccgtgaagcttcgaaaacgaaggatatcaccgggggtcttccg
cgcgttgccgaattgtttgaggctcgtaaaccgaaagaagcagctatcatctctgagatc
gatggttatgtgacattcggtaaagacgttaaaggtaaacaacgtgtgatcgtaactcct
gaagtgggtgagcaaaaagaatacctcatccctaaaggtaagcacgttgcagtaagagaa
ggtgagtacgtaagagccggtgaggctttgatggatggtccaacaaatcctcatgacatt
ctggcggttctgggtgctaaagccttgtctgcataccttgtagatgaaatccaagaagtt
tacagacttcaaggggttggtatcaatgacaagcatatcgaagtcattgttcgtcagatg
ctacgtaaagtagaaatccgtgatgccggcgacagccgcttcctggctggtgagcaagtt
gaaagatacgcttacatggaagaaaacgaacgtattaacaaagagggtggccaacctgct
acttgcagcccacttcttcttggtattactaaggtttctttgagcactgacagctggatt
tcagcagcgtccttccaggaaactacaaaagttcttacggaagcagcgatcaattctcgt
acagaccatttgcgtggcctgaaagagaatatcatcatgggtcgtctgattcctgcggga
actggtttgacatcttacaaacgctggaaagtgtctgtgcatgaagatgacgatatcggc
tttgttgcattgccgggtatgacgtcttccgtacagcctcaaggctaa
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