Bdellovibrio bacteriovorus 109J: EP01_01340
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Entry
EP01_01340 CDS
T03079
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bbac
Bdellovibrio bacteriovorus 109J
Pathway
bbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP01_01340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbac03019
]
EP01_01340
03400 DNA repair and recombination proteins [BR:
bbac03400
]
EP01_01340
Enzymes [BR:
bbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EP01_01340
Messenger RNA biogenesis [BR:
bbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EP01_01340
DNA repair and recombination proteins [BR:
bbac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EP01_01340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Cas3-like_C_2
ResIII
Rhodanese
MRP-L28
Motif
Other DBs
NCBI-ProteinID:
AHZ83595
LinkDB
All DBs
Position
complement(295194..296786)
Genome browser
AA seq
530 aa
AA seq
DB search
MKVSFMEIAVSPQENQLKKYFNLSGFRRGQKEIIESVMGGRDVLAVLPTGGGKSLCYQYP
AVATQKLVIVISPLIALMKDQVASLRRYGIPAGALHSGQSDDDKREVFAEINKGGAFVLY
LSPERAQKEGFHRWVQNRTVGLFAIDEAHCVSQWGHDFREEYAQLNVLKKLCPDVPVLAL
TASATPTVLDDISKHLKLQKPERMVHGFYRSNLYYQVELCEDEDAKLLLLLQSIKQTPEG
RIIVYCGTRKVTESIAAFLQKKFGKSVGYYHAGLTSEVRTSTQEAYAKGELRILVATNAF
GMGIDQPDVRLVVHFQIPANIDALYQEMGRAGRDGEHSTCLTLYSKKDKGLQSFFIHSSE
APDEIKDARWRNLDALVNYSEGGECRHAEILTYYKDSRRIERCGHCDSCDPKSARRIQKS
VTPLAKVDQVVTKLKKASSKSKKIINTDDIVLDEMQEKRMEVLKRWRREKAKELDVPAFV
VFGDLTLRQLAVKNPRTLDEMKNIYGIGDSKLEKFGWDVLAELGDPARRL
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgtcgtttatggaaatcgccgtcagcccgcaggaaaaccagctaaaaaaatac
ttcaatctttccggtttccgacgcgggcaaaaagagatcatcgaatcggtgatgggcggc
cgtgatgtgttggcggtccttccgaccggcggcggtaaatcgctgtgttatcagtatcct
gccgtggccacgcaaaaacttgtcatcgttatttccccgctgattgctctgatgaaggat
caagtggcatcgctgcgtcgatacggcattccggcaggcgccctgcattccggacaaagt
gatgacgacaaacgcgaggtgttcgccgaaatcaacaagggcggcgcctttgttttatat
ctttccccggagcgtgcgcaaaaagaaggtttccatcgctgggtgcaaaaccgcaccgtc
ggactttttgcaattgatgaagctcactgcgtttctcagtgggggcatgacttccgcgag
gaatatgcgcagctcaatgttttgaaaaaactgtgcccggatgtaccggtgctggcgctg
accgcctcggcgactccgactgttttggatgacatctctaaacatctgaaactgcaaaag
cccgagcgcatggtccacgggttctatcgctctaatttgtattatcaggtagagctttgt
gaagacgaagacgcaaaactgctgctgctgcttcaaagtatcaaacaaacccctgaaggc
cggatcatcgtttactgcggtactcgtaaagtgactgaaagcattgcggcctttttgcag
aagaagttcggtaaaagcgttggctactaccatgctggcctgacttctgaagttcgcacc
agcacccaggaagcttatgctaaaggggagctgcgcattctggtggcgaccaatgctttc
ggcatgggaatcgatcaaccggatgtgcgcctggtggtgcatttccagattcctgccaat
atcgatgctctttatcaggaaatggggcgtgcgggccgtgatggcgagcattcgacctgt
ctgacgttgtattcaaagaaagacaagggcttgcagtccttcttcattcacagttccgaa
gcgccggatgaaatcaaagacgcgcgctggagaaacttggacgccctggtgaactattcc
gaaggtggtgagtgccgtcacgccgagatcctgacctattacaaagactcccggcgtatt
gagcgttgcgggcactgtgacagctgtgacccgaaatcagcccgtcgtatccagaaatct
gtgactccgctggcgaaggtggatcaggttgtcaccaagctgaaaaaagcctccagcaag
tccaagaagatcatcaacaccgacgatatcgtgctggatgagatgcaggaaaaacgcatg
gaagttcttaagcgctggagacgtgaaaaagcgaaagagctggatgtgcccgccttcgtg
gtctttggagatctgaccctgcggcagttggcggtgaaaaatccgcgcaccctggacgag
atgaaaaacatctatggcatcggtgattccaaactggaaaagttcggctgggatgtgctg
gcagagctgggcgatcctgcacgccgcctttaa
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