Bdellovibrio bacteriovorus 109J: EP01_02480
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Entry
EP01_02480 CDS
T03079
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bbac
Bdellovibrio bacteriovorus 109J
Pathway
bbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP01_02480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbac03019
]
EP01_02480
Enzymes [BR:
bbac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EP01_02480
Messenger RNA biogenesis [BR:
bbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EP01_02480
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AHZ83815
LinkDB
All DBs
Position
complement(531065..532714)
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AA seq
549 aa
AA seq
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MKFSELNLDSQLLSAIQKLNYDDCTPIQEQAIPPVLDGKDVAGLAQTGTGKTAAFVIPVM
ERILRARPIQGEVTEEQKALIEKRAYKDWKPQNFVLILVPTRELAEQVQDNINKLSVDSG
LRGFAIYGGTGYDKQKEALKNGVEFIVATPGRLIDLYKEHLVDLKQVRAIVFDEADRMFD
MGFKDDMKYILQRVPRERQLLVFSATLNFDVLNTIYQFGSEPVEINISRDQAKADNVKDQ
IFHVGSDEKPQHLLSLLKVHNPKQAIIFTNFKMSVERIAKFLVENGVPAMAISSLLTQAQ
RNRVIEQFKAENDMNVLVATDVAARGLDIKGVDMVVNYELPMDSESYVHRIGRTGRAGTT
GQAFSLVGDKDIESLGRIEDYLKHKIEIGYLENDQLLKDFKPMTSSYDGHYPKSLDRARA
PREGGRGGDRGPRREGDRGPRRERGDRGPRQDRGPRPEGQQKSAQGAGAQQTQGGGQRPD
SRPRRQEGGPKRPHDAKRGEQRQPRNDQARKPHGQQQPRQGASAKKRVPMAAQKSIGQKV
AGFFKRLFS
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattctcagaattgaatttagattcccaattgttatctgcaatccagaagttgaac
tatgatgattgcacgccgatccaggaacaggccatcccgccggttttggacggtaaagat
gttgccggccttgctcagaccggaacaggtaaaaccgctgctttcgtgattccagtgatg
gaacgtatcctcagagcccgcccgatccagggtgaggtgaccgaagagcaaaaagccctg
atcgaaaaaagagcttacaaagactggaagcctcagaacttcgtattgatcctggttccc
acgcgcgagttggcagagcaggttcaggacaacatcaacaaactgagcgttgattccggc
cttcgtggtttcgcgatttatggcggtacaggttacgacaaacaaaaagaggcgttgaag
aacggtgttgaattcatcgtggcgactccgggccgtttgatcgatctgtacaaagaacat
ctggtggacctgaaacaggttcgtgcgatcgtcttcgatgaagcggacagaatgtttgat
atgggcttcaaggacgacatgaagtacatccttcagcgcgttcctcgtgagcgtcagttg
ctggtgttcagtgcgactttgaactttgatgttttgaacaccatctatcagttcggttcc
gagccggtggaaatcaacatcagccgtgaccaggccaaagcggacaacgtgaaagaccag
atcttccacgtgggctctgatgaaaagcctcagcatcttctgtctttgctgaaagtgcac
aatccaaaacaagccatcatcttcaccaacttcaaaatgagcgtcgagcgcatcgcgaag
ttcctggttgaaaacggtgtcccagccatggcgatttcaagccttctgacccaggctcag
cgcaaccgcgtgattgagcagttcaaggctgaaaacgacatgaacgtgctggtggcaacg
gatgttgcagcccgcggtctggacatcaaaggcgtggacatggttgtgaactatgaactg
ccgatggactctgaatcctatgttcaccgtatcggtcgtactggccgtgcgggcacaacg
ggtcaggcgttttctttggtgggcgacaaggacatcgagtctttgggacgcattgaagat
tatctgaaacacaaaatcgaaatcggctatctggaaaacgaccagctgctgaaagacttt
aaaccgatgacttccagctatgacggtcattatccaaagtctctggaccgtgcgcgtgcg
cctcgtgaaggtggacgtggtggtgacagaggtcctcgccgtgaaggcgaccgtggtcct
cgtcgcgagcgcggtgatcgcggacctcgtcaggatcgtggtcctcgtccagagggtcag
cagaaatctgcacaaggtgcaggtgctcagcagactcaaggtggcggtcagcgtccggac
agccgtccaagaagacaagagggtggtccgaagcgtcctcacgatgcaaaacgtggcgaa
caaagacaaccaagaaacgaccaggctcgcaaaccgcacggtcaacaacagccgcgccag
ggggcttctgcgaagaagcgtgtgccaatggcagcgcaaaaatccatcggccagaaggtc
gcaggattcttcaaacgtctgttctcttaa
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