Bdellovibrio bacteriovorus 109J: EP01_03985
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Entry
EP01_03985 CDS
T03079
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bbac
Bdellovibrio bacteriovorus 109J
Pathway
bbac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP01_03985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbac03019
]
EP01_03985
03016 Transfer RNA biogenesis [BR:
bbac03016
]
EP01_03985
Enzymes [BR:
bbac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EP01_03985
Messenger RNA biogenesis [BR:
bbac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EP01_03985
Transfer RNA biogenesis [BR:
bbac03016
]
Prokaryotic type
tRNA degradation factors
EP01_03985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AHZ84102
LinkDB
All DBs
Position
836887..838980
Genome browser
AA seq
697 aa
AA seq
DB search
MKTTVTTSVGGKQITIETGRLAKQADGAALVSSGNNMVLVTATSSKKASELDFFPLTVEY
IEKFYATGKIPGGYFKREAKPTNDAVLIARLIDRPIRPVFPEGYRHETQIVATVLSADGA
FPLEILASLGASAALHCSDIPFNGPTAAVQIARVDGQFVANPTPQQMEKSDMDMIVAGTR
NGLLMVEGETKFISEADALAALKFGHQSLIPLLNAQDELREKAGSVAKRAFTAPSIDADF
KAKAESLLRPKIAAALSIKEKQDRYAAANEAAAEAEKALLADIADKELLKQRKKELNSIV
EDLKYQEARSMILDRAVRIDGRDVKTVRPIANEVGILPRAHGSGLFTRGETQVLGTVTLG
TADDEQMVDSLLGLQKRKFMLHYNFPPYSVGEVGRMSGTSRREIGHGNLAERAIKAVLPD
FEKFPYTIRIVSEVLESNGSSSMGTVCSGIMALLDAGVPLKGNVAGVAMGLIKEGDRVAV
LTDILGDEDHLGDMDFKVAGSPAGITALQMDIKIDSVSFEVMEQALAQAKEGRAHILNEM
EKVMKVPRGQISEFAPRIETIKIKPDKIREVIGSGGKVIRGITEATGVKIEIQDDGTINI
ASADPEATKKAIAMINDIIAEAEVGKTYKGRIVKIAEFGAFVEILPNTQGLLHISEISNE
RVRAVSDVLKEGEIIDVKVLEVDRSGRVKLSRKALLQ
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgactgtcacaacatcggtgggtggaaaacaaattaccatcgaaacaggccgt
ttggcgaaacaagcggatggcgccgctttggtaagctccggtaacaacatggttcttgtt
actgcaacttcctcaaaaaaagcctctgaactggatttcttccctctgactgttgagtac
atcgagaagttctacgcaacaggcaaaatcccaggtggttacttcaaacgtgaagcaaaa
ccaaccaacgacgcggttctgatcgctcgtcttatcgaccgtccaatccgccctgtattc
cctgaaggctaccgccacgaaacacaaatcgttgcgacggtgttgtctgcggatggcgca
ttcccactggaaattctagcgagccttggtgcatccgcggctttgcattgctctgacatt
ccattcaacggcccgacagcagctgtgcaaatcgcacgcgttgacggtcagttcgttgcc
aacccaactccacagcagatggaaaaatctgacatggacatgatcgttgcgggtactcgc
aatggtttgttgatggttgaaggtgaaacgaaattcatctctgaagcagacgctttggca
gccttgaaattcggtcaccagtctttgattcctcttctgaacgcacaggatgagttgcgt
gaaaaagccggttctgtggcgaaacgcgctttcactgctccatccatcgatgcagacttc
aaagccaaagctgaaagcctgttgagacctaaaattgcggcggctctttccatcaaggaa
aaacaagaccgttatgcagctgccaacgaagcagccgcagaagctgaaaaagctcttctt
gctgacatcgctgacaaagagcttttgaagcagcgtaaaaaagaactgaactctatcgtt
gaagatctgaaataccaggaagctcgttccatgattctggatcgcgctgttcgtatcgac
ggtcgtgacgtgaaaactgtacgtcctatcgcgaacgaagtgggtatcctgcctcgcgct
cacggttccggcttgttcacccgtggtgaaactcaagtattgggcactgtgactttgggt
acggctgatgacgaacaaatggtggattcactgttgggtcttcagaagcgcaagttcatg
cttcactacaacttccctccatactctgtgggtgaagtgggtcgtatgtccggtaccagc
cgtcgtgagatcggtcacggtaacctggctgagcgcgcgatcaaagcggttcttccggac
ttcgaaaaattcccttacacaatccgtatcgtgtctgaagttttggaatccaatggttcc
tcttccatgggtactgtttgctccggtatcatggcattgcttgacgccggtgttcctttg
aaaggcaacgttgccggtgtggcaatgggtctgatcaaggaaggtgaccgcgttgcggtt
ctgacggacatccttggtgacgaagatcacctgggtgacatggacttcaaagtggcgggt
tctcctgcgggtatcactgctttgcagatggatatcaaaattgactccgtttccttcgaa
gtgatggagcaggctttggcgcaagctaaagaaggccgcgctcacatcctgaacgaaatg
gaaaaagtgatgaaggttcctcgtggtcagatctctgaatttgcacctcgtatcgaaacc
atcaaaatcaagccagacaagatccgtgaagtgatcggctccggtggtaaagtgatccgt
ggtatcactgaagctactggcgttaagatcgagatccaggacgacggtactatcaacatc
gcgtctgctgatccggaagcaaccaagaaagcaattgcaatgatcaacgacatcatcgct
gaagctgaagtgggcaagacctacaaaggccgcatcgtgaaaatcgctgagttcggtgct
ttcgttgaaatccttccgaacacacaaggtcttctgcacatctctgaaatctccaacgaa
cgtgtacgcgcagtttctgacgtactaaaagaaggtgaaatcatcgatgtgaaagttctt
gaagtggaccgttctggtcgcgtcaagctttcccgcaaggctttgctacagtaa
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