Bdellovibrio bacteriovorus 109J: EP01_07165
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Entry
EP01_07165 CDS
T03079
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bbac
Bdellovibrio bacteriovorus 109J
Pathway
bbac03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EP01_07165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbac03400
]
EP01_07165
Enzymes [BR:
bbac01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
EP01_07165
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
EP01_07165
DNA repair and recombination proteins [BR:
bbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
EP01_07165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AHZ84716
LinkDB
All DBs
Position
complement(1475177..1475989)
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AA seq
270 aa
AA seq
DB search
MPELPEVEVVRRGLETILKDQPILEKVELMRKDLREPIPAKKISTLVGQPLTSIERRAKY
LLLWTPKGAMLSHLGMTGTWRVAVPGDERLHDHIYLHFSGDLRLAYRDPRRFGCFDFVQD
PLKHPKLADLGPEPLEAEFNGPLLWEKLRGKDVALKVALMDQKVVVGVGNIYASEALFAA
GIKPTLPARKLSLERASLLVGEIKKILSQSIKAGGSSISDFAQASGESGYFQTSFRVYGR
DKEPCVTCGQQVKSKVLGGRNTFWCSRCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttccagaggtcgaagtcgtccgccggggcctggagaccatattaaaagac
cagccaattttggaaaaagtcgaactgatgcgcaaagacctgcgcgagcctattcctgct
aaaaaaataagcactctggttggtcagccgctgacctccatcgagcgtcgcgccaaatac
ttgctgctctggacgcccaaaggcgccatgctgtcgcacctgggaatgaccggaacctgg
cgggtggcggtgccgggagatgaacggctgcatgaccatatatatctgcatttttccgga
gacttgcgcctggcttaccgcgatccgcggcgttttggttgttttgactttgttcaagac
ccgttaaaacatcctaaattggcggatttggggccggagccgttagaggcggaattcaat
ggaccgctgctgtgggaaaagctgcgcggcaaggatgtcgctctgaaagtggctttaatg
gaccagaaggttgtcgttggtgtcgggaatatctatgccagcgaagcgttgttcgccgcc
ggaatcaagcccacgctgccggcgcgaaagctgtccttggaaagagcttcgcttttggtg
ggcgagattaaaaaaattttatctcagtccatcaaggcgggtggatcttcgatcagcgac
tttgcccaggcctctggcgaaagcggttattttcagacaagctttcgggtttacggtcgg
gacaaagagccttgtgtgacttgcgggcaacaggtgaaatcgaaagttctgggcgggcga
aacaccttctggtgttcgcgttgccaaaaataa
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