Bdellovibrio bacteriovorus 109J: EP01_10385
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Entry
EP01_10385 CDS
T03079
Name
(GenBank) Fis family transcriptional regulator
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bbac
Bdellovibrio bacteriovorus 109J
Brite
KEGG Orthology (KO) [BR:
bbac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbac03016
]
EP01_10385
Enzymes [BR:
bbac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EP01_10385
Transfer RNA biogenesis [BR:
bbac03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EP01_10385
Prokaryotic type
tRNA splicing ligases
EP01_10385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AHZ85342
LinkDB
All DBs
Position
complement(2163689..2164873)
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AA seq
394 aa
AA seq
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MPVLSNIKSAHVPVKIWSPESEVESQALKQLQNVASLPFVFKHVAAMPDVHLGIGATVGS
VIATKGAVIPAAVGVDIGCGMIAARLNVNPEMVLHDLDRLRAGIESVIPLGHESNKRLTK
EVQSWQGWKHMPESVSLLRLKDRASHQLGSLGGGNHFIEICTDEEGSVWVMLHSGSRNVG
KSLAEEHIRGAKSEISRLAVKLPDPDLAYYLEGTSEYENYMRDLEWAQSYALENREEMLR
RVMEVISHHVGKKGAPLPHSLKVNCHHNYATREVHYGENVLVTRKGAVRARKDDLGIIPG
SMGARSYIVRGKGNAESFDSCSHGAGRRMSRSEAKRRFSLEDLQKQTAGVECRKDAGVID
EIPGAYKDIDQVMKNQTDLVEVVAVLKQVLCVKG
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgccagtcctgtcgaatatcaagtctgctcatgttccggtgaaaatctggtccccggaa
tccgaagtggagtcacaagcactgaagcagcttcagaatgttgcatcgttgccatttgtt
tttaagcacgtggctgcgatgcctgatgtgcatcttggaattggagccacagtcggaagc
gtgattgccaccaaaggtgcggtgatccctgcggcggtcggtgtggatataggctgtggc
atgatcgcggcacgtctgaacgtaaatcccgagatggttctgcatgatttggatcggttg
cgtgcaggcattgaaagtgtgattcccttggggcatgagtccaacaaacgcctcaccaag
gaggtgcaaagctggcagggctggaagcacatgccagagtccgtgtcgctgttgcgcctg
aaagaccgcgcgtcccatcagttgggaagtcttggcggaggcaatcactttattgaaatc
tgcacggacgaagagggctcggtgtgggtgatgttgcattcaggctcccgcaatgtcggc
aaaagcctggctgaggaacacatccggggtgctaaaagtgaaatttcgcgtctggcggtg
aaactgccggatccggatctggcgtattatctggaaggcaccagtgaatacgaaaattac
atgcgtgatctggaatgggcgcaaagttatgctctggaaaaccgcgaagagatgcttcgt
cgggtgatggaggtgatctctcatcacgtaggcaaaaaaggggccccgctgccgcactcg
ctcaaggtcaactgtcaccacaactatgccacgcgggaagttcactatggcgaaaacgtc
ctggtcacacgcaaaggggccgtgcgtgcgcgcaaagatgatctggggattatccctggc
tccatgggggcaaggtcgtacatcgtgcgcggcaagggcaatgcggaatcttttgactcc
tgttcgcacggggcgggccggcggatgtcacgctctgaagccaaacgtcgattcagtctt
gaagatttgcagaaacaaacagcgggcgtggagtgtcgcaaggatgccggggtgattgat
gaaattcccggagcctacaaggacatcgaccaggtgatgaaaaatcaaacagatctggtc
gaggtcgtggcggtgttaaaacaggtactgtgtgtgaaaggctag
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