Bdellovibrio bacteriovorus 109J: EP01_12790
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Entry
EP01_12790 CDS
T03079
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
bbac
Bdellovibrio bacteriovorus 109J
Pathway
bbac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EP01_12790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbac03400
]
EP01_12790
DNA repair and recombination proteins [BR:
bbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EP01_12790
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EP01_12790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
AAA_21
AAA_29
nSTAND1
AAA_16
RsgA_GTPase
DnaJ_CXXCXGXG
UvrA_inter
AAA_33
AAA_15
AAA_23
nSTAND3
Anti-TRAP
AAA_25
Viral_helicase1
NMDAR2_C
Motif
Other DBs
NCBI-ProteinID:
AHZ85805
LinkDB
All DBs
Position
complement(2643138..2646086)
Genome browser
AA seq
982 aa
AA seq
DB search
MKDIHLWGVKQNNLKNIEVKIPVGSMTVICGPSGSGKSSLAFETLFAEGQRRFIESMSNY
ARQFLNKAPKPDIEGINNIPPAISIEQKNTVKSSRSTVGTTTEIIDYLRLLYEKIGKSYC
PTHHCPTEKESVTEATDKVLKNFAGKRGYLLVEINSEGRVAEGKKLHSLLLQDGYLRIYI
PKVTEVKKTAAKAAGKKTKASGKKASKKVETPEIVATHPGGLTNEEMGTVVEIGEAAAIK
KGLPKETFYLVIDRMSFNEDERGRLADSLTQAYEASIKYNTHLITRRATILSTDGERLQV
SEEASCPVCGYTPPPLSSKLFSFNSPIGACPTCKGFGNILDIDEEKVIPNPNLSLAQGAL
SPFWMPSAAHEKKQLLAYCKKTKIDTHTPWKDLPKAERDVIWNGNKDFFGVRGLFEYLDQ
IKYKMHVRVFISRFRSPFQCPTCKGARLRTEANHVLIANSNINDLSNLTIEDLNTFFQKL
EVTPFQQEVAGEVLKQIRSRLEFLMRVGVHYLSLGRETRTLSGGEYQRLILANQLGMGLS
QALYVLDEPTVGLHPRDNDRLISILKDLKDLGNTLVIVEHDHDVIKASEHIIEMGPGSGY
LGGEVVYSGTTEKFYDYEKSNTVPFLKPSKNWQALRTIRPVDVDNYKVKIELKGAKGHNL
KNLDVTFPLNRLVTVTGVSGSGKSTLISKTLYPALARALDIEYMPAQDYSGLDGVEHIKN
VLLIDQSPIGKSARSSPITYLKAFDAIRMIMSTTPESQSRGYTAGTFSLNVDGGRCPACK
GTGYEEIDMMFMDNVVIPCDVCDGKKYRPEILEIQYKNKNIHEILSMTVNEAMNFFVAHP
NIRKPLSVLKEVGLDYLQLGQPANSLSGGESQRLKIAKELSQVQQKSTLYILDEPTTGLH
FREVELLMKVLNKLIETGGSVVVVEHNLDVIRGSDYVIDLGPEAGKKGGNIVATGTPDDI
MKVKKSLTGQYLKRYIESHQTS
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatattcacctctggggggtgaaacaaaacaatcttaagaacattgaggtcaag
atcccggttggttccatgactgtgatctgcggccccagtggttccgggaaatcttccctg
gccttcgaaacattgtttgccgaaggtcagcgtcgctttatcgaaagcatgtccaactat
gcccgtcagtttctgaacaaggctccgaagccggacatcgaaggcatcaacaatattccc
ccagctatttcgattgagcagaaaaacacggttaaaagttcccgctcgacggtggggacc
acgactgaaatcatcgactatcttcgcctgctttacgaaaaaatcgggaaatcctactgc
ccgactcaccattgccccaccgaaaaagaaagtgtgaccgaagccaccgacaaggttctg
aagaactttgccggaaagcgcggttatcttctggtcgaaatcaattctgaaggccgcgtg
gctgaaggcaaaaaacttcattccctgctgctgcaagatggttatctgcgcatctatatt
ccgaaagtgacggaagttaaaaagacggcagcaaaagcagctggcaaaaaaaccaaagct
tccggcaagaaagcctccaaaaaagtcgaaactcctgaaattgtagcgactcatcctggt
ggcctgaccaatgaagaaatgggcaccgtcgtcgaaatcggcgaagcagccgcaatcaaa
aaaggtctgcctaaagagaccttctatctggtgatcgaccgtatgtccttcaacgaggat
gaacgcggccgcctggcagattcactgactcaagcctatgaagccagcatcaaatacaac
acgcatctgatcactcgcagagcgaccattctttctacagatggagagcgcctgcaagtc
agtgaagaagcgtcctgcccggtgtgtggttatactccgccgccactgagctcgaaactt
ttcagcttcaattccccgatcggggcctgcccgacgtgcaagggcttcggaaacatcctg
gatatcgacgaagaaaaagtgattccaaatccgaatttgagcctggctcaaggggcctta
agccccttctggatgcccagtgctgcccatgaaaaaaagcagctgcttgcctactgcaaa
aagaccaagatcgacactcacaccccttggaaggaccttcccaaggctgaacgtgatgtg
atctggaatggaaacaaagatttcttcggcgtgcgtggtctgtttgagtaccttgatcag
atcaaatacaaaatgcacgtgcgggtgttcatctcccgtttccgcagtccgttccagtgc
ccgacctgcaaaggcgcgcgcctgcgcacggaagccaatcacgtgcttattgcaaattca
aatatcaatgatctttccaatttgacgattgaagatctgaatactttcttccaaaaactg
gaagtcacccctttccagcaggaagtagcgggtgaagtgttaaaacaaatccgctcacgt
ctggaatttctgatgcgcgtgggggttcattatctgtccctgggacgtgaaacccgcaca
ctgtctggcggggaatatcagcgtttgattcttgcaaaccagctgggcatggggctttct
caagctttgtatgttttggacgaacccacggtgggtcttcacccgcgcgacaacgatcgt
ttgatttccatcctgaaggatctgaaagaccttggaaacactctggtgattgtggagcac
gatcacgacgtgatcaaagccagcgaacacatcatcgaaatgggtcctggctcaggctat
ctgggcggtgaagttgtttactcgggcacaaccgagaagttctatgactatgaaaagtcc
aacacggttccgttcctgaagccttccaaaaactggcaggctttacgcacgattcgtccg
gtggatgtggataactacaaagtcaaaattgaattaaaaggcgccaaaggacacaacctg
aagaatctggatgtgaccttcccgctaaaccgtctggtgactgtgacgggggtcagtggt
tctggtaaatcgactctgatttcaaaaactctgtatccggctttggctcgtgcactggat
attgaatatatgccagcccaggactattcaggcttggacggtgtggagcatatcaaaaac
gtgctgctgattgaccagtccccgattggtaaatccgcacgaagctcgccaatcacttac
ctgaaggcgtttgatgccattcgcatgatcatgtccacaacacctgaatctcagtcccgt
ggttacacggccggaaccttcagtttgaatgtggatggtggtcgctgcccggcctgcaaa
ggcacgggttatgaggaaatcgacatgatgttcatggataacgtggttatcccatgtgac
gtctgtgacggaaaaaagtaccgacccgagatcctcgagattcaatataagaacaaaaac
attcacgaaattctttcaatgaccgtgaatgaagccatgaatttcttcgtggcccacccg
aacatccgcaagcccctgagcgtgctaaaagaggtcggactggattacctgcagctgggg
caaccggccaactctttaagcggcggggaatcccagcgcttaaaaatcgccaaagagctg
tctcaggtccaacagaagtccaccctgtacattctggacgaaccgaccaccggcctgcac
ttccgtgaggtggagctattaatgaaggttctgaacaagctgattgagactggcggcagc
gtcgtcgtcgtggagcacaatctcgatgtgatccgtggctcagattatgtgattgacctc
ggtcctgaagcaggtaaaaagggcggaaacattgtggcgacaggcaccccggacgatatc
atgaaagtgaagaaaagtctgacggggcaatatctcaagcgttatatcgagagccaccaa
acctcgtaa
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integrated database retrieval system
