Pseudobacillus badius: K7T73_06495
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Entry
K7T73_06495 CDS
T07942
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bbad
Pseudobacillus badius
Pathway
bbad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K7T73_06495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbad03019
]
K7T73_06495
Messenger RNA biogenesis [BR:
bbad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K7T73_06495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF7600
P8
YDR124W_N
Motif
Other DBs
NCBI-ProteinID:
UAT31869
LinkDB
All DBs
Position
1289969..1291636
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AA seq
555 aa
AA seq
DB search
MSKKKNEIIKVIPLGGVGEIGKNMTVIEIDEEIFVIDSGLMFPENEMLGIDIVIPDISYL
IENKERVKGIFLTHGHEDAIGSLGYVLQKIKAPVYGTKLTIALAKMRLREENVKEEVKYY
TVHSDTRLRFDGVEVTFFRTTHSIPDSVGIAIHTSEGAIVHTGEFKFDQAAKGLYAPDIG
KMAQIGQNGVFMLLSDSTEAERPGHTTSEEVIASQMSDAFHMAKGRVIVASFASNLIRIQ
QVFDAAHKNGRKVAVSGKSMQRVNDVAIRLGYLNVQEDTLISLQEIADYPEHEIVILTTG
VQGEPIEALQKMAKGTNKLVKIKEGDTVLITATPSPGLELLMAKTVNLLYRSGANVVTGN
RKVHVSGHGFQEDLKFMLNLMKPRYFIPIQGEYRMLKAHAKLAQQIGVAAENIYLPEKGD
VVEYKNGKLRVTSKVAAGNVLIDGIGVGDVGNIVLRDRKLLSQDGIFIVVITLSKKQKRI
VSGPEIISRGFVYVRESEKLMEQSTKLITDIVEKNMTGESFDWSSIKQDIRDQLNSFLFE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaagaaaaagaatgaaataattaaggtgattccgcttggcggagtaggtgaaatt
ggaaaaaatatgaccgtgatcgaaatagacgaagaaatttttgtgatcgacagcgggctg
atgtttccggaaaatgaaatgctcggcatcgatatcgtcattccggatatttcttattta
attgaaaataaagagcgggtaaagggcatcttcttaacacacggtcatgaggatgcgatc
ggttcattaggctatgttctgcaaaaaattaaagcacctgtgtacggtacgaaactgaca
atcgctttagcaaaaatgcgcctgcgcgaggagaatgtgaaggaagaagtaaagtactat
accgttcactcggacacacggcttcgctttgacggtgtagaagtgactttcttccgcacg
actcatagcattccagactctgtcggcatagcgattcatacatctgaaggtgcgattgtg
cataccggagagtttaaatttgatcaggcggccaaaggcttgtatgcgcctgatatcggc
aagatggcacaaatcggccagaatggcgtatttatgcttttgtccgattctacagaagca
gagcgtccgggacatacaacctctgaagaagtgatcgccagtcaaatgtcagatgccttt
cacatggcaaaagggcgcgttatcgtcgcttcctttgcttcgaatttgattcgtattcag
caagtgtttgacgccgcccacaaaaatggacggaaagtcgctgtcagcgggaaaagcatg
cagcgcgtcaatgatgtagcaattaggctgggttatttaaacgttcaggaagacaccctg
atcagtcttcaggagattgctgactaccctgaacatgaaattgtgatcttaaccacgggc
gttcaaggcgaaccgattgaagcgctccaaaagatggccaaaggaacgaacaagcttgta
aaaattaaagaaggcgacacggttttaattacagccacaccatcaccaggattagaattg
ctcatggcaaaaacagtgaaccttctttatcgttccggcgcgaatgtcgtaacagggaac
cgcaaagtccatgtgtccgggcatggtttccaagaggacttgaagttcatgcttaactta
atgaagccgcgctattttatcccgatccaaggagaataccgcatgctgaaagctcatgca
aagcttgctcagcaaataggtgtggctgcagaaaacatctacctgcctgagaagggcgat
gtggttgaatacaaaaacggcaaactgcgcgtcacctctaaagtagctgccggaaatgta
ttaatcgacggcattggcgttggcgatgtcggcaatatcgtcttgcgcgaccgcaagctc
ttgtctcaagacggcattttcatcgtcgtcattaccttgagcaagaagcaaaaacgaatt
gtctccggtccggaaattatctctcgcggctttgtctacgttagagagtcagaaaagcta
atggagcagtcaacgaaattaattactgatattgttgagaagaacatgactggcgaatct
tttgactggtccagcattaagcaagatattagagatcagctgaactcattcctgtttgaa
aaaacaaaacgccgtccgatgatcctcccaatcattatggaagtatag
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