Microvenator marinus: FRD01_04635
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Entry
FRD01_04635 CDS
T08125
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bbae
Microvenator marinus
Pathway
bbae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRD01_04635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbae03019
]
FRD01_04635
03009 Ribosome biogenesis [BR:
bbae03009
]
FRD01_04635
Enzymes [BR:
bbae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRD01_04635
Messenger RNA biogenesis [BR:
bbae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FRD01_04635
Ribosome biogenesis [BR:
bbae03009
]
Prokaryotic type
rRNA helicases
FRD01_04635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
Peripla_BP_4
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QED26543
UniProt:
A0A5B8XR59
LinkDB
All DBs
Position
1087557..1089692
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AA seq
711 aa
AA seq
DB search
MRCKIMSCKQSTEAGATIRRHLTCQMPSTQAQRNRDKMTTFTENKGFGDYFLSSEMLQAL
EKVGYQTPTPVQHAAIPLVMAGIDLIVQSQTGTGKTAAFGVPSIELLDPRPGIIEMLVLA
PTRELARQVAAEIERLGEFKGINVATIYGGTSYEKQYEEIEKASIICATPGRLVDILKRG
KISFDNLRVLCLDEADEMLSMGFAEDLNTIIGYLPEERQSLLFSATITPEVKALANNMLY
YPEFITFSSNSVAAEDVEHSFFMINGVSRTRDLLAVLQHEEPDNAIIFANTKDDTFMVTR
FLKRHGYRADVLNGDLAQKDRESTLKALKEGQIDFLVATDVAARGIDISDLTHVINYTLP
ESAEVYIHRTGRTGRAGKKGKAMSLVSPKEMGVLFNIRKLYKFPIHERTLPSSEDIRQAR
QERRVESVMSSVMTNGVNYGPQMGVAQALVGSDDVEKVRFVAKLLAFATSYSGPLSSPAA
ELPVEDVRAERPARDEKPAIKEESKRPLVPETTEKREVLRVRPSKLAKQEEVEAPEPRAE
ESQKPRRTRRNSRSQSNEVTAAPSAPVAEESKPRRQRQRPDSQDDKGILKEARQERTEKK
DDDRRRSKRKRRGGRDRERTETTPLPPLPEIPREFAKVWINRGKTHSVDRDAIVEMVCYM
AGIEPEDLGSVQVEQTFSYAEVREDYLYDIIQAMNQQEYQGATIAAEPARR
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgcgctgcaaaataatgtcatgcaagcaaagtacggaagctggcgcgacgattcgacgg
cacctgacgtgccaaatgccgagcactcaagctcaacggaatagagataagatgactacc
tttacggaaaacaagggcttcggggactacttcctcagctccgaaatgcttcaagcccta
gaaaaagtgggttaccaaaccccaaccccggtacaacacgcagcgattccgctggtgatg
gcagggatcgatttgattgttcagtcccaaacgggaacgggcaagactgccgcattcggc
gttccctcaattgagctgctcgaccctcggccgggcatcattgaaatgttggtgcttgcc
cccacacgtgagttggcgcgccaggtcgcagcggaaattgaaaggcttggtgagtttaaa
ggtatcaacgtcgcgacgatttacggcggcacatcctacgagaagcaatacgaggagatc
gagaaggccagcattatctgcgctactccgggacgccttgtagatatcctgaagcgtgga
aagatctctttcgacaacctcagggttctttgcctcgacgaagccgatgagatgctctcg
atgggatttgccgaggacctcaacacgatcatcggctatttgccagaagagcgacaaagc
ttgctcttcagcgccacgatcacgcctgaggtaaaggcgctcgcaaacaacatgctctat
tatccggagttcattacgttctccagcaattccgttgcagcggaagatgttgagcatagc
ttcttcatgatcaatggtgtgtctcgtactcgcgacctactcgccgttctccaacacgaa
gagcccgacaacgcgatcatctttgcaaacaccaaagacgacacgtttatggtgacccga
ttcctcaaacgacatggttaccgagccgacgttttgaacggcgaccttgcgcagaaagac
cgtgaaagcacgcttaaggcactcaaggaaggtcagatcgatttcctcgtcgccacggac
gttgctgctcgaggcatcgatatctcggatttgactcacgtcatcaactatacccttccc
gagagtgccgaggtctacatccataggaccggaagaactggccgtgcgggcaagaagggt
aaggcgatgagcctggtatcccctaaagaaatgggcgtacttttcaacattcgaaagctc
tacaaattcccgattcatgagcgtacgttgccaagctccgaggacattcgacaggccagg
caagaacgacgggttgaatctgtgatgagctccgtcatgaccaacggcgttaactacggc
ccgcaaatgggcgtagcgcaggcgcttgttggatccgatgacgtagaaaaagtgcgtttt
gtggccaaactactggcgttcgcgacaagctactcgggccccctctcaagtccggccgct
gaactcccagttgaggatgtccgcgctgagagacctgcgcgtgacgagaagccagccatc
aaagaagagagcaaacggccactcgtgccagagaccacggaaaagcgcgaagttcttcgt
gtacgtccttcaaaactcgcgaaacaggaggaagtagaagcccctgagcctcgcgctgaa
gagtcacaaaagccacgacgcactcgtcgcaattcacgatcccagtcgaacgaagttacc
gccgcgccgagtgcgccggtcgctgaagagtctaagccgcgtcgtcagcgtcagcgccca
gactcacaggacgacaagggcatcttgaaggaggcccgacaagagcgcaccgagaagaaa
gacgacgatcgtcggcgctccaagcggaagcgccgcggtggacgcgaccgagagcgcaca
gaaaccacgccacttccacctctgccagagatccctagagagtttgcgaaggtttggatc
aatcgcggaaaaacccattcggtggaccgtgacgcgatcgtagagatggtctgttatatg
gcaggaattgaaccggaagatctcggtagtgttcaggtcgagcaaaccttctcatatgca
gaggtgcgcgaagattatttgtacgatattatccaagccatgaatcaacaagaataccaa
ggcgccaccatcgcagcggaacctgcgcggcgctag
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