Microvenator marinus: FRD01_19820
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Entry
FRD01_19820 CDS
T08125
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bbae
Microvenator marinus
Pathway
bbae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FRD01_19820 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbae03021
]
FRD01_19820 (rpoC)
03400 DNA repair and recombination proteins [BR:
bbae03400
]
FRD01_19820 (rpoC)
Enzymes [BR:
bbae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FRD01_19820 (rpoC)
Transcription machinery [BR:
bbae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FRD01_19820 (rpoC)
DNA repair and recombination proteins [BR:
bbae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FRD01_19820 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
ArnB_C
Motif
Other DBs
NCBI-ProteinID:
QED29441
UniProt:
A0A5B8XW89
LinkDB
All DBs
Position
4826999..4831162
Genome browser
AA seq
1387 aa
AA seq
DB search
MSKDIFSFFEKQKDPLSFSAIRIGIASPEKIREWSHGEVKKPETINYRTHKPERDGLFCA
KIFGPVKDYECICGKYKRMKHRGVVCERCGVEVIQAKVRRERLGHINLATPVAHIWFLKS
LPSRIGNLLDITLKDLEKVLYCVAYIVTDPGLTPFEKGEVITEARYIEAMNEYGNTFAAG
MGAEAIKVLLDDMDIDLIATELRAEMKEATSEAKRKRISKRLKIVEAIRDSGNNPQWLIL
DVIPVLPPDLRPLVWLEGGRFATSDLNDLYRRVINRNNRLKKLLELHAPEIIIRNEKRML
QEAVDALFDNGRRGKSIQGANRRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVAGP
QLKLHQCGLPKKMALELYKPFIYNKLEERGYVTTIKSAKKMVEKERPEVWDILDEVIKEH
PVMLNRAPTLHRLGIQAFEPLLVEGKAIQIHPLVCAAYNADFDGDQMAVHLPLSLEAQME
TRVLLLSTNNILSPAHGGPVIGPTQDIVLGCYYMTRDRPFVPGEYRENEKGEAIAGVYAS
RDEVRMAYDAGALHLQAKIKVRIDGELVDSTTGRVLLADVVPEGIPFSLVNNVMGKKALG
QLIDACFRMVGNKATVLLADAIRATGYEQSTRAGISISVNDMVIPPTKWEIVDKARAEVA
EIEEQYGEGFITDGERYNKVVDIWANTTEDIASQMSKEISTQKYVDPKTGEVKEDKSFNS
VFIMADSGARGSAQQMRQLSGMRGLMAKPSGEIIETPITANFREGLTVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVANDCVVREIDCGTLDGVDMTAHFEGGEIIESLKDRILG
RVALEPVWDSDDNILVDANQEIDEDIADTIEDAGIEKVRIRSTLTCSTLDGVCALCYGRD
LARGRMVNVGEAVGTIAAQSIGEPGTQLTMRTFHIGGVSSLRVEQSSHEARTAGTVRLEN
VKFVEREELGKKSLIVMTRNGEIVIQDDAGRERERYPLVYGARLYFKDGDKIAAGNLIAE
WEPFATPVITDQAGIVKFDDLFEGISMEERFDENTGLSRKVITESRDTSLRPRIVIRENK
KGGKQLNAFFLPVGAQIFVQEGQELEVGTILAKIPRETTKNKDITGGLPRVAELFEARKP
KEHAIISEIDGVVTFGKETKGKRTVVVTPEIGDARSYQIPKGKHITVLEGDHVRRGEALM
EGSENPHDILRVRGRKELSKYMVDEIQEVYRLQGVRINDKHIEIIVRQMLRKVRIVDVGD
SDFLADESVERSVVEEVNLRLQNQGLRRAVWDDLLLGITKASLSTESFISASSFQETTKV
LTEASLSSKVDHLRGLKENVITGRLIPAGTGAPVYQKLKHKVIEPEELPDDIVRKYGNID
EELAAGE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaggacattttcagcttcttcgagaaacagaaagatcctctcagcttttcagca
atccgcatcggtattgctagccccgagaagattcgtgagtggtctcacggcgaggtaaag
aagccagagaccatcaactacagaacgcataagcctgagcgagacggactcttctgcgcg
aagatcttcggacccgtaaaagactacgagtgcatctgtggaaaatataagcgcatgaag
caccgcggtgtggtgtgtgagcgttgtggtgttgaggttattcaggcgaaggttcgccgc
gagcgcctcggccatatcaaccttgcgacccctgtggcgcatatctggttcctgaagagc
ttgccttcacgtatcggaaaccttctcgacatcacgctcaaagaccttgagaaagttctc
tactgcgtggcctatatcgtgaccgacccaggcttgactccctttgagaagggcgaggtc
atcactgaggctcgttatatcgaggctatgaacgagtatggaaacaccttcgctgcgggc
atgggcgctgaggccatcaaagtccttctggacgatatggatatcgacctgatcgcgact
gagcttcgtgctgagatgaaggaagccacaagcgaggccaagcgtaagagaatctccaag
cgcttgaagatcgttgaggcgattcgcgattccggaaataacccacaatggttgattctg
gacgtgatcccagttcttcctccagaccttcgtccgttggtctggttggaaggtggccgt
tttgcgacgtctgacttgaacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctc
aagaagttgcttgagcttcacgctccagaaatcatcatccgtaacgagaagcgtatgctt
caagaagcggtggatgccctcttcgacaacggtcgtcgtggaaagtccatccagggtgcg
aaccgtcgtccgctcaagtccctctcggacatgatcaagggtaagcaaggtcgcttccgt
cagaaccttctcggaaagcgcgttgactactccggtcgttccgtgatcgtggctggtcca
cagctcaagctgcaccagtgcggtcttccaaagaagatggctctcgagctctacaagccg
ttcatctacaacaagcttgaggagcgtggctacgtcacgaccatcaagtctgccaagaag
atggttgagaaagagcgtccagaagtgtgggatatcctcgacgaagtgatcaaagagcac
ccggttatgcttaaccgtgctccgacgcttcaccgtctcggtattcaggcgttcgagcca
ctcttggtcgaaggcaaagctatccagattcacccgctcgtgtgtgcggcgtacaacgcc
gacttcgacggtgaccagatggctgttcaccttccgctttcactcgaagcccagatggag
acacgcgttcttcttctgagcacgaacaatatcctttcaccggcacacggtggtccggtc
atcggacctactcaggatatcgttctcggttgctactacatgacacgcgatcgtcctttt
gttcccggtgaataccgcgagaacgagaaaggcgaggcgattgctggtgtctacgcaagc
cgcgacgaagtgcgtatggcgtacgatgcgggcgctcttcaccttcaggcgaagatcaaa
gtccgtatcgacggcgagctcgtggattcgaccacaggtcgcgttctgctcgcagacgtg
gtgcctgagggcattccattcagcctcgtgaacaacgtcatgggtaagaaggccctcggc
cagcttatcgacgcctgcttccgtatggttggaaacaaagccaccgtgctcttggccgac
gccatccgtgccaccggctacgagcagtccacacgcgctggtatctcgatttcggtcaac
gacatggtcatcccaccgacaaagtgggagatcgtggacaaggctcgtgccgaggttgcc
gagatcgaagagcagtacggcgagggcttcatcactgacggtgagcgatacaacaaggtt
gtggacatctgggccaacaccactgaggacatcgcttcgcagatgtcgaaagagatttcg
actcagaagtacgtggatccgaagaccggcgaagtcaaagaagacaagtcgttcaactcg
gtcttcatcatggccgactccggtgctcgtggttctgctcagcagatgcgccagctctcc
ggtatgcgtggtctgatggccaagccgtccggtgagatcatcgagactccgattacggct
aacttccgtgaaggtctgaccgttctcgagtacttcatctcgacacacggtgcgcgtaaa
ggtcttgcggataccgccttgaagacggctaactcgggttatctgacgcgtcgtctcgtg
gacgttgccaacgactgtgtagttcgagaaatcgattgtggcacgcttgacggtgtggac
atgactgctcacttcgaaggtggtgagatcatcgagtcactcaaggatcgtatccttggt
cgtgttgctcttgagcccgtctgggatagcgatgacaacattcttgtcgacgccaaccaa
gagatcgacgaggacatcgctgacaccatcgaggatgcaggtatcgagaaagtgcgaatt
cgctcgactctcacctgttctaccttggacggtgtgtgtgccctttgttacggccgtgac
ctcgcacgtggccgtatggtcaacgtcggtgaggccgtcggtacaatcgctgctcagtcg
atcggtgagccaggtactcagttgaccatgcgtacgttccacatcggtggtgtttcgtct
cttcgtgttgagcaatcttcacatgaggcacgcacagccggtacggttcgtctcgaaaac
gtcaagttcgtcgagcgcgaagaactcggtaagaagtctcttatcgtgatgactcgtaac
ggcgagattgtgattcaggacgatgcgggtcgtgagcgtgagcgctacccactggtctac
ggtgctcgtctttacttcaaagacggcgacaagattgctgctggcaatctcatcgctgag
tgggaaccgttcgcaacacctgtcatcactgaccaggctggtatcgtgaagttcgacgat
ctcttcgaaggcatctccatggaggagcgcttcgacgagaacaccggtctttcacgtaag
gtgatcaccgaaagccgcgacacgagccttcgtcctcgaatcgtgatccgcgaaaacaag
aaaggtggaaagcagctcaatgccttcttcctccctgttggcgctcagatcttcgttcaa
gagggtcaggaactcgaagttggtaccatcctcgccaagattcctcgtgaaaccacgaag
aacaaggacatcaccggtggtcttccacgtgttgccgagctcttcgaggcacgtaagcca
aaagagcacgccatcatctcggaaatcgacggtgtggtgacgttcggcaaggaaaccaaa
ggcaagcgtacggttgtcgttacacctgaaatcggtgacgcgcgttcgtaccagattccg
aagggcaagcacatcaccgtgctcgaaggcgaccacgtgcgacgtggtgaagccctcatg
gaaggctccgagaacccacacgatattcttcgtgtacgtggtcgcaaagagctctccaag
tacatggtggacgagatccaagaggtttaccgactccaaggtgtgcgtatcaacgataag
cacatcgagatcatcgtgcgtcagatgctccgcaaggtccgcatcgtagacgtgggtgac
tccgacttcttggccgatgagtcggtcgagcgttcggtggtggaagaagtgaacttgcgc
cttcagaaccagggcttgcgccgtgcggtttgggatgacttgttgctcggaatcacgaaa
gcctcgctttcgaccgagtcgttcatctcggcgtcttcgttccaagagaccaccaaggtg
ctcaccgaggcttcgctctcgagcaaagtcgaccacctgcgcggactcaaagagaacgtc
atcacgggtcgtcttatcccagctggtaccggtgctccggtctaccagaagctcaagcac
aaggtcatcgagcctgaggagcttccagacgatatcgtacgtaagtacggcaatatcgat
gaagagctcgccgcaggtgagtaa
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integrated database retrieval system
