Burkholderiales bacterium GJ-E10: E1O_07460
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Entry
E1O_07460 CDS
T03654
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bbag
Burkholderiales bacterium GJ-E10
Pathway
bbag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E1O_07460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbag03019
]
E1O_07460
Enzymes [BR:
bbag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E1O_07460
Messenger RNA biogenesis [BR:
bbag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E1O_07460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
NAD_binding_3
HEM4
Cas3-like_C_2
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BAP87877
UniProt:
A0A0A1H5D5
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All DBs
Position
786863..788272
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AA seq
469 aa
AA seq
DB search
MSDYSDFDHFGLDPRLVAAVRALGYTRPTPIQSKAIPIVLRGGDVMGAAQTGTGKTAGFS
LPILHRLLPHASTSMSPARHPVRALILAPTRELADQVAVNVRQYAAQTPLRSAVVYGGVD
MDPQTQALRAGVEVLVATPGRLLDHLQSRNTSLSQVQAVVLDEADRMLDMGFLPDISRIL
NLLPRERQSLMFSATFSDEIKKLAGNFLRDPVLVEVARSNATAETVRQVLVRVHESEKEA
ALTALLRDHDYAQVLVFVNAKIGARRLARQLERDGVPTESIHGDKSQDERMKALDAFKAG
AVRVLVATDVAARGLDISALPAVINYDVPFSAEDYVHRIGRTGRAGADGVAFTIASGADD
KAVAAIEKLIKRRIEPITVDLRLPPRRPAPSRSEGAGHEGGRHDGGRRPARGASAQRGSA
APVDDFFLKPYEPGPSAPAETGAATAAAPVAEERKPTVRRAALLGGGRR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactactccgatttcgatcatttcgggctcgacccccgactcgtcgccgcggtg
cgtgcgcttggttacacgcgccccacgcccatccagtccaaggcgattcccatcgtgctg
cgtggcggcgacgtgatgggcgcggcgcagaccggcaccggcaagactgccggattctcc
cttccgatcttgcaccggctgctgccgcacgcgagcacgagcatgtcgcccgcgcggcat
ccggtgcgcgccctgattctcgcgccgacgcgggaactggcggaccaggtcgccgtcaac
gtgcgccaatacgcggcgcagacgccgttgcgcagcgcggtggtgtacggcggcgtcgac
atggatccgcagacccaggcgttgcgggccggcgtggaagtgctcgtcgcaaccccgggg
cgcctgctcgatcatctgcagtcgcgcaacacctccttgtcgcaggtgcaggcggtcgtt
ctcgatgaggcggatcgcatgctcgacatgggattcctgccggacatctcgcgcatcctc
aacctgttgccgcgggagcggcagagcctgatgttctcggcgacgttctccgacgagatc
aagaagctcgccggaaactttctccgcgatccggtgctggtcgaggtcgcgcgcagcaac
gccacggcggagacggtgcgccaggtgctcgtacgggtgcacgagtcggagaaggaggcc
gcgctgacggcattgttgcgcgatcacgattacgctcaggttctggtcttcgtgaacgcc
aagatcggtgcgcggcggctggcgcggcaactcgaacgcgacggcgtgccgacggagtcg
atccacggcgacaagtcgcaggacgagcgcatgaaggcgctcgacgcattcaaggccgga
gcggtgcgcgtgctcgttgcgaccgacgtggccgcacgaggtctggacatctcggccttg
cccgcggtcatcaattacgacgtgccgttttcggcggaagactatgtccaccgcatcggc
cgtaccggccgggcgggagccgacggcgtcgcgttcaccatcgccagcggggccgacgac
aaggcggttgccgcgatcgaaaagctgatcaagcggcgaatcgaaccgataacggtggat
ctccgtcttcccccccgccgccccgccccgagccggagcgaaggcgcagggcacgaaggc
ggcaggcacgacggtggccgtcgtcccgcccgcggcgcatccgcgcagcggggatcggcg
gcgccggtggacgatttctttctcaagccctacgaacccggtccgtcggcgcccgcggaa
acgggggcggcaaccgctgccgcacccgtggcggaggagcgcaagcccaccgtccggcgt
gccgccctgctgggcgggggacgcaggtaa
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