Burkholderiales bacterium GJ-E10: E1O_21830
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Entry
E1O_21830 CDS
T03654
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbag
Burkholderiales bacterium GJ-E10
Pathway
bbag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E1O_21830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbag03400
]
E1O_21830
Enzymes [BR:
bbag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E1O_21830
DNA repair and recombination proteins [BR:
bbag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E1O_21830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
SNF2-rel_dom
AAA_25
AAA_16
HemY_N
Motif
Other DBs
NCBI-ProteinID:
BAP89314
UniProt:
A0A0A1H7Q0
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All DBs
Position
2322459..2326031
Genome browser
AA seq
1190 aa
AA seq
DB search
MQHSPESGAVPPLPPQIPPQWTTLRTGQRYTIPRPPGSGDALLLARFAIEGKSEGRSTVL
VCADALDAQRLAEELRVFAPTLSVCAFPDWETLPYDTISPHPDLVSERLQTLYRLSHGEG
IDVLVTAATTALARLVPPEFLAGRSFFFRQGEDLDADKLRDQMVLAGYQSVSQVVAPGEF
AVRGGLIDLYPTGSAVPYRIDLADTLIDSIRAFDPDTQRSLYPVPEIRLLPGREFPFDEA
ARTAFRGRWRETFEGDPSRSPVYRDAGNGIASAGIEYYLPLFFARCATLFDYLPAAARIA
LHGDVAAACRQFRADTSERHRFLSRDAQRPCLDPDRLYLGTDDFFVALKPYAQLAVAPAP
AGEEGPGERRVFAALPDLTVDRKAADPLHRLRLWCQAFPGRVLISADSPGRRETVAQLFR
DHDFAVRDCASVAEFFALSGADRAPSATLTVSPLHQGFCVPGIDAPSATPFATPFAIVTE
AELYASNPNRQRGRGRERASNVEAMVRDLAELRIGDPVVHSEHGIGRYLGLETMDLGEGP
AEFLHLEYAKGAKLYVPVAQLHCISRYSGADPESAPLHTLGSGDWERARRKAAQQIHDTA
AELLNLYALRAARKGHAFAFSEADTQRFAEGFGFEETPDQQAAIDAVLRDMRAGSPMDRL
VCGDVGFGKTEVALRAAFAAVSGGKQVAVLCPTTLLAEQHAQTFRDRFANWPVRIRELSR
FRSPKETAQAIDGLRNGTIDIAIGTHKLLSAEMRFANLGLVIIDEEHRFGVRQKERLKTL
RAEVDVLTLTATPIPRTLAMSLEGIREFSVIATAPQRRLAVKTFVRQNSPGLIREACLRE
LKRGGQIYFLHNEVETIENQRARLAELLPEARIGVAHGQMPERDLERVMHDFYQQRFNLL
LCTTIIETGIDVPTANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLIEEGAITKNA
EKRLEAIQSLEELGSGFYLAMHDMEIRGAGEVLGDSQSGNVQEIGFDLYSQMLNAAVRGL
RSGKEPDLLRPLAATAEINLHVPALLPGDYVPDVHQRLSFYKRLASASDADALAAMQEEI
VDRYGRLPPPARALLDTHRLRLDAERLGIQRIDAAPGAIVLQFVPQPAIDPANIIALVQR
DRRVRFAGQDRLRIEPAAEKIEERLQQLRAVFQALTAASAPPPPEPKRKR
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgcaacattctccagagtccggcgccgtcccgccgcttccgccgcagattccaccgcaa
tggacgacgctgcgaaccggccagcgttacaccatcccccggccgccgggatccggcgat
gccctgctgctggcccggttcgcgatcgaagggaaatcggagggccggtccaccgtgctc
gtctgcgccgacgcgctcgacgcgcagcggcttgccgaggagttgcgcgtgttcgcgccg
accctgtcggtctgcgcctttcccgactgggaaacgctgccctacgacacgatttcgccg
caccccgacctggtttcggaacggctacagaccttgtaccgtctttcccacggcgagggc
atcgacgtcctcgtcaccgcggcgaccacggcgctcgcacgcctggtcccgccggaattt
ctcgccggccgcagttttttcttccgccaaggggaggatctcgacgccgacaagctgcgc
gaccagatggtgctcgccggctaccagtccgtctcgcaggtcgttgcgccgggcgagttc
gcggtgcgcgggggcctgatcgacctctatccgaccggctcggcggtgccgtaccggatc
gatctcgccgacacgctcatcgattcgatccgcgcgttcgaccccgacacccagcgcagc
ctctatccggtacccgagatccggctgctgccggggcgcgagttccccttcgacgaagcc
gcgcgcaccgcattccgcggccgctggcgcgaaaccttcgaaggcgacccgagccgctca
ccggtgtatcgcgatgccggcaacggcatcgcctcggcggggatcgaatactacctgccg
ctcttcttcgcgcgctgcgcgaccctgttcgactacttgccggccgccgcgcggatcgcc
ctgcacggggacgtcgcggcggcctgtcggcaattccgggccgacacgtcggaacggcat
cgattcctgtcgcgcgacgcgcagcggccctgcctcgatccggatcgcttgtacctgggg
acggacgatttcttcgtcgcgctcaagccctacgcgcagcttgccgtcgcgcccgcccct
gcgggcgaagagggtccgggtgaaaggcgcgtattcgccgcgctccccgatctcaccgtc
gaccgcaaggccgccgatcccctgcatcgcctgcgcctctggtgccaggcgttcccgggc
cgcgtcctgatctcggccgattcgcccggccggcgcgagaccgtcgcgcaactgttccgc
gatcatgacttcgccgtccgggactgcgcgagcgtggcggaattcttcgcgttgtcgggc
gccgaccgcgcgccgtcggcgacgctcacggtctcgcccttgcatcaagggttctgcgtt
cccggaatcgacgcaccgtccgccacgccgtttgccacgccgtttgccatcgtcaccgaa
gcggagctctacgccagcaacccgaaccgccagcgcgggcggggacgcgagcgcgcctcc
aacgtcgaggccatggtgcgcgatctcgccgaactgcgcatcggcgacccggtcgtgcac
tcggaacatggcatcggccgctacctcggtctcgagacgatggatctgggcgagggaccg
gcggaattcctgcacctcgaatatgccaagggcgccaagctctacgttccggtggcgcaa
ctgcactgcatcagccgctacagcggcgccgacccggaaagcgcgccgctgcacaccctg
ggttcgggggattgggaacgcgcccggcgcaaggcggcgcagcagatccacgacaccgcc
gccgaactcctcaacctctatgcgctgcgcgcggcgcgcaagggtcacgccttcgcgttt
tcggaagccgacacccagcgctttgccgagggcttcggcttcgaggagacgccggaccaa
caggcggcgatcgatgccgtgctgcgcgacatgcgcgccggcagtccgatggaccgcctg
gtctgcggcgacgtcggattcggcaaaaccgaggtcgccctgcgcgcggcctttgccgcc
gtgtcgggcggcaaacaggtcgccgtgctgtgcccgaccaccctgctcgccgagcagcat
gcccagacgttccgcgaccgcttcgccaactggccggtgcggatccgcgaactatcgcgg
ttccgctcgccgaaggaaaccgcacaggcaatcgatgggctgcgcaacggcaccatcgac
atcgccatcggcacgcacaaactgctctcggcggaaatgcgcttcgccaatctcggtctg
gtgatcatcgacgaggaacaccgcttcggcgtgcggcagaaggaacggctcaagaccctg
cgtgcggaggtcgacgtactgaccctcaccgccacgcccatcccgcgcacgctggcgatg
tcgctcgaggggatccgagaattctcggtcatcgccaccgcgccgcagcgccgcctcgcc
gtcaagaccttcgtgcgccagaacagtcccgggctgattcgcgaggcctgcctgcgcgaa
ctcaaacggggcggccagatctacttcctgcacaacgaggtcgagacgatcgagaaccag
cgcgcccgcctggccgagttgctgccggaggcccgaatcggggtcgcgcacggccagatg
cccgagcgcgacctcgagcgcgtgatgcacgacttctaccagcagcgcttcaacctgctg
ctctgcacgacgatcatcgaaaccgggatcgacgtcccgacggccaacaccatcgtcatc
catcgtgccgaccgcttcggcctggcacagctgcaccagctgcgcggccgggtgggacgc
tcgcaccaccaggcgtacgcctacctgctgatcgaggagggcgcgatcaccaagaacgcc
gaaaaacgcctcgaagcgatccagagcctcgaggagctcggcagcggcttctacctcgcg
atgcacgacatggagatccgcggcgccggcgaggtgctgggcgattcccaatccgggaat
gtgcaggagatcggcttcgacctttattcgcagatgctcaatgccgcggtccgggggctg
cgttcgggcaaggagccggacctgctgcggccgctcgccgcgaccgcggagatcaacctg
cacgtgccggccctgctgcccggcgactatgtccccgacgtgcatcaacgcctgtcgttc
tacaagaggctggcatcggcctccgacgccgacgcgctcgccgcgatgcaggaggagatc
gtcgaccgctacggccggctgccgccgccggcgcgcgcgctgctcgacacgcaccgcctg
cggctcgacgccgagcgcctgggcatccagcgcatcgacgccgcacccggcgcgatcgtc
ctgcaattcgtgccgcagcccgcgatcgacccggcgaacatcatcgcgctggtgcagcgc
gaccgccgcgtgcgcttcgccggacaggaccggctgcgcatcgagccggcggccgagaag
atcgaagagcgcctgcagcagctgcgggcggtcttccaggcattgaccgcggcatcggct
ccgccgccacccgaaccgaagcgaaagcgataa
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