KEGG   Beijerinckiaceae bacterium MG08: CU048_09400
Entry
CU048_09400       CDS       T10676                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bbai  Beijerinckiaceae bacterium MG08
Pathway
bbai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bbai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CU048_09400 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bbai03021]
    CU048_09400 (rho)
   03019 Messenger RNA biogenesis [BR:bbai03019]
    CU048_09400 (rho)
Transcription machinery [BR:bbai03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     CU048_09400 (rho)
Messenger RNA biogenesis [BR:bbai03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     CU048_09400 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 S1CSD-TOTE-2 AAA_25 NACHT AAA ATPase_2 AAA_14 Spore_III_AA
Other DBs
NCBI-ProteinID: QBR71460
LinkDB
Position
complement(2014266..2015534)
AA seq 422 aa
MQEIKLQDLKLKSPTELLAFAEEHEVENASIMRKQELMFAILKQLASRDIEIVGEGVIEV
LQDGFGFLRSPDANYLAGPDDIYVSPSQIRRFGLRTGDTVEGLIRSPKEGERYFALLKVN
TINFEDPEKIRHKVHFDNLTPLYPDERLKLEVDDPTKKDLSARVIDIVAPIGKGQRALIV
APPRTGKTVLLQNIAQSVTANHPECYLIVLLIDERPEEVTDMQRSVHGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVADKRTFPA
IDITRSGTRKEELLVPSDTLKKMYVLRRILNPMGTVDGIEFLLGKLRETPKGNAAFFESM
NT
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgcaggaaattaaactgcaggacttgaagctcaagtcgccgaccgaattactcgctttc
gccgaagagcatgaagtcgagaacgcatcgatcatgcgcaagcaagagctgatgttcgcg
attctcaagcagctggcgagccgcgacattgagatcgtcggtgaaggcgtcatcgaggta
ttacaggacggctttgggtttttgcgctcgcccgatgccaattatctggcgggacccgac
gatatttacgtgtcgccctcgcaaattcgccgctttggtttgcggactggcgatacggtt
gaaggcttgatccgaagcccaaaggaaggcgaacgctatttcgcgctgctcaaggtcaac
acgatcaatttcgaagatccggaaaaaatccggcacaaggttcacttcgacaatctgacg
ccgctttatccggacgagcgtcttaagctcgaagtcgacgatccgaccaaaaaggatttg
tcggcgagagtaatcgatattgtggcgccgatcggcaaaggccagcgcgccctgatcgtg
gctcccccgcgcaccggcaaaaccgtgcttttgcaaaatatcgcgcaatcggtcacggcc
aatcatcccgaatgctatctgattgtgctgctgatcgacgagcggccggaagaagtgacc
gatatgcaaagatcggttcacggcgaagtcgtgtcgtcgacgttcgatgagcctgcggtg
cgacatgtccaggtcgccgaaatggtcatcgagaaggccaagcggctcgtcgagcatggc
cgcgatgtcgtgatccttctcgactcgatcacccggctcgggcgcgcctataacaccgtg
gtgccctcatccggcaaggtcttgaccggtggcgtcgatgccaatgcgctgcagcgcccc
aagcgcttctttggtgcggcgcgcaacatcgaggaaggtggatcgctcaccatcatcgcg
accgcgctgatcgataccggctcgcggatggacgaagtgatcttcgaggaattcaaaggc
accggcaattccgaaatcattctcgaccgcaaggtggccgacaagcggacattcccggcc
atcgacatcacccgatccggcacccgcaaggaggaattgctcgtgccgtcggatacgctg
aagaaaatgtacgtgctgcggcgtatcctgaacccgatgggtacggtcgatggcatcgaa
ttcctgcttggaaaactgcgggaaaccccaaaaggtaacgcagcgttcttcgagtcgatg
aacacgtaa

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