Bacillaceae bacterium IKA-2: RJD24_01845
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Entry
RJD24_01845 CDS
T10990
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bbam Bacillaceae bacterium IKA-2
Pathway
bbam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RJD24_01845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbam03019
]
RJD24_01845
03009 Ribosome biogenesis [BR:
bbam03009
]
RJD24_01845
Enzymes [BR:
bbam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RJD24_01845
Messenger RNA biogenesis [BR:
bbam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RJD24_01845
Ribosome biogenesis [BR:
bbam03009
]
Prokaryotic type
rRNA helicases
RJD24_01845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
AAA_19
DUF4422
Motif
Other DBs
NCBI-ProteinID:
WNF37227
LinkDB
All DBs
Position
339459..340979
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AA seq
506 aa
AA seq
DB search
MTTFNEFGINEQIIRAISDMGFEEATPIQTQTIPTALAGKDLIGQAQTGTGKTAAFGIPL
IEKTDVKSSDIQSIILTPTRELAVQIAEEINKIGHFQGVRALPIYGGQDISRQLRALKQN
PQIIVATPGRFMDHMRRKTIRLQGIKMVVLDEADEMLNMGFVEDIETILKEVPETRQTLL
FSATMPKRIQTLAQKFLKEPEFISVKTKEMTVENVDQQYMEVQEKQKFDVLCRVLDIQAP
ELAIIFGRTKRRVDELSEALLKRGYIAEGIHGDLNQAKRDSVIRKFKEGTIEILVATDVA
ARGLDVTGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGIAMMFVSPREIDHLKSIERMTK
RKIVKLPVPTFAEAIEGQQRLTVDKLLETIAEKDFQGYKNSAEQLLEEVDSVTLVSAALK
MLTKEPSLTPVKITGEAPLRAKKASFGGKRTDKGNYRGGSSSSSSSSKGRGDRDRNRGRN
KEGGGGGERPARNNAERSFSKRNKNK
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacttttaatgaatttggtattaatgaacagattattcgtgcgatttcagatatg
ggatttgaggaggcaacaccaattcaaacccaaacgatcccgacagctttagcaggtaag
gatctaattggacaagcacaaacaggaacaggaaaaacagcagcattcgggattcctctt
attgaaaaaacggatgttaaaagcagtgatattcaatcaattattttaacacctacgcga
gaattagcagtgcaaattgctgaagaaataaacaaaattggtcacttccaaggagtacgt
gctttacctatttacggaggacaagatattagccgtcaattgagagcactaaagcaaaac
ccacaaattattgtcgcaacaccaggtcgcttcatggatcatatgcgtcgtaaaacaatt
cgtcttcaaggcattaaaatggttgttcttgatgaagccgatgaaatgttaaatatgggt
tttgttgaggatattgaaacaattttgaaagaagttcctgaaactcgtcaaacattactt
ttttcagcgacaatgccaaaacgaattcaaactttagcacagaaatttttaaaagagcct
gaatttatttctgttaaaacgaaggaaatgacagttgaaaacgtcgatcaacaatatatg
gaagtacaagaaaaacaaaagtttgatgtgctttgtcgtgtattagatattcaagcacct
gaacttgcaattatttttggccgcacaaagcgtagagttgatgagctttcagaagcatta
ttaaagcgaggctatattgcagaaggaattcacggtgatttaaatcaagcgaaacgtgac
agtgtcattcgcaagtttaaagaaggaacgatcgaaatccttgtcgctactgatgttgca
gctcgtggacttgatgtcacaggcgttactcacgtttacaactttgatattcctcaagat
ccagaaagttatgttcaccgtattggccgaacaggtcgtgccggaaaaagcggtattgcg
atgatgtttgtgtcaccaagggaaattgatcatttaaaatcaattgaaagaatgacgaag
cgtaaaattgtcaagcttccagtaccaacatttgcagaagctattgaaggtcaacaacgc
ttaacagtcgataaactgttagaaacgattgcagagaaagatttccaagggtataaaaat
agtgctgagcaactgttagaagaagttgattcagtgacacttgtttctgcagcattaaaa
atgttaactaaagaaccgagtttaacacctgtaaaaattactggtgaagcgccacttcga
gctaaaaaggctagttttggtggaaaaagaactgataaaggtaattaccgcggcggaagc
agcagcagtagtagcagcagcaaaggacgcggcgatcgcgatcgtaatcgtggacgcaac
aaagaaggcggcggcggtggcgaacgtccagcacgaaataacgctgagcgcagctttagt
aaaagaaataaaaacaaataa
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