Bacillaceae bacterium IKA-2: RJD24_04515
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Entry
RJD24_04515 CDS
T10990
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bbam Bacillaceae bacterium IKA-2
Pathway
bbam02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bbam00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RJD24_04515 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbam03021
]
RJD24_04515 (rpoD)
Transcription machinery [BR:
bbam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RJD24_04515 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
WNF37729
LinkDB
All DBs
Position
918872..919984
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AA seq
370 aa
AA seq
DB search
MADKSLRPVAEGELSIDQVKEQLVELGKKRGVLTFAEVTEKLSVFDQDSDQMDEFFEYLG
EQGIEVLNETEDTPNVRETVKEEFDLNDLSVPPGIKINDPVRMYLKEIGRVPLLSAENEI
ELAKKIEAGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYE
KGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEE
VSKEMDLSPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKE
QLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPS
RSKRLKDFLE
NT seq
1113 nt
NT seq
+upstream
nt +downstream
nt
atggcagataaatcgcttcgccctgtggcagaaggagaattgtcaatcgatcaagtaaag
gaacaattagtagaactcggaaaaaagcgaggtgtactaacgtttgccgaggtaacagaa
aaattatctgtttttgatcaagactcagatcaaatggacgagttctttgaatatttgggt
gaacaaggtattgaggtattaaatgaaacagaggatacaccgaacgttcgagaaactgta
aaagaagaatttgatttaaatgatttaagcgtcccacctgggattaaaatcaatgatcct
gttcggatgtatttaaaagaaattggtcgcgtcccacttctttctgcagaaaatgagatt
gagctagcaaaaaagattgaagcaggcgacgaagaagcgaagagaagattggctgaagct
aacttgaggctagttgttagtattgccaagcgttacgttggtagaggaatgttgtttctt
gatttaattcaagaaggtaatatgggcctaatcaaagctgttgaaaagttcgactatgag
aaaggttataagtttagcacttatgcaacatggtggatacgtcaggcgataacaagagct
attgctgaccaagcaagaacaattagaataccagtgcatatggttgaaacaattaataaa
ctaattcgtgtccaacgtcaattactccaagatcttggtcgtgaaccaacaccagaagaa
gtatcaaaagagatggatctatctccagaaaaagtaagagaaattttaaaaatagctcaa
gaaccggtttctttagaaacaccaattggggaagaagacgactctcaccttggtgatttc
attgaagatcaagaagcgctagctccgtctgatgcagcagcttacgaacttctgaaagag
cagttagaagatgttttagatacattaacagatcgtgaggaaaatgtccttcggcttcgt
tttggattagatgatggacgtactcgtactcttgaagaagttggtaaagtatttggcgta
actcgtgaaagaattcgtcaaattgaagcgaaagcgttgcgtaaacttcgacatccaagt
agaagcaaacgacttaaagatttcttagaataa
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