Bacillaceae bacterium IKA-2: RJD24_06045
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Entry
RJD24_06045 CDS
T10990
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bbam Bacillaceae bacterium IKA-2
Pathway
bbam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RJD24_06045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbam03019
]
RJD24_06045
03400 DNA repair and recombination proteins [BR:
bbam03400
]
RJD24_06045
Enzymes [BR:
bbam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RJD24_06045
Messenger RNA biogenesis [BR:
bbam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RJD24_06045
DNA repair and recombination proteins [BR:
bbam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RJD24_06045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
WNF37992
LinkDB
All DBs
Position
1215148..1216656
Genome browser
AA seq
502 aa
AA seq
DB search
MNLDKELFNHFKLASFRPGQKEIIIDLLNNHDVLAMLPTGSGKSICYQLPAFLLEGITIV
VSPLLSLMEDQVQQLKSQGLKQVVAINSFLTPWERDRALEQLAKQKIVYLSPEILQSKSV
MKRLSELTISLFVIDEAHCISQWGHEFRTDYLKLNNVRKKLGQPPCLAITATATEEVKRD
IIDKLNLRDFKAHIYSIDRPNIAFSVCKSANSSSKKIAELVALVQDLQGPGLIYASTRKW
TEKLATVLKSKGVNNVSYYHGGMENEDRLLIQQQFINDELSLICCTSAFGMGINKANIRY
VIHFHAPLQMESYLQEIGRCGRDGKESIAITLYNEDESPLQVSLLTKDLPNEKQLNEVLY
YLQLQEQGIRLNELRLIQETGITEIMWRFIRFHLEEQGRIIDQKYRITEVNQERSQQSIQ
KKINERIDYKLKKLTQFQAWLKQAESCRRELVLAQFDERLMKKSEKCCDKCGINIEDYYD
KQPSVNKPLIRTWQGELKSLFE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagataaagaattatttaatcattttaagctcgccagttttcgccctggacaa
aaagagattattattgaccttttaaataatcacgatgtacttgcgatgctcccgacagga
tcaggaaaatcaatatgttatcagttgccagcatttttattagaagggatcacgattgtc
gtatcaccattgttatcgctaatggaagatcaagttcagcaattaaaaagtcagggttta
aaacaagttgttgctattaatagttttttaaccccgtgggaacgagacagggccctcgag
cagctagctaagcaaaagattgtttatctctcaccagaaattttgcaatcaaaaagtgta
atgaaacgtttaagtgagttgacgatttcactttttgttattgatgaggctcattgcatc
tcgcagtggggacatgagtttagaacagattacttaaaattaaataacgtaagaaaaaaa
ttaggtcaaccaccatgcctggcgataacggcaacagcaacagaagaagtaaaaagggat
attattgacaagttgaatttacgagattttaaagctcatatttacagtatagatcgccct
aatatcgctttttccgtctgtaaaagcgctaactctagttcaaaaaaaatagctgaactc
gtcgcattggtccaagatttacaaggtccaggacttatttacgcttcaacaagaaaatgg
acagagaaacttgctacagtcctcaagagtaaaggagttaataatgtttcatactatcat
ggaggcatggaaaatgaagatcgtttattaattcagcaacagtttattaacgatgaactc
tcattaatttgttgtacgagcgcttttggtatggggataaataaagctaatattcggtat
gttattcattttcatgctcctttgcaaatggaatcgtacttacaagaaatcggtcgctgt
ggtcgagatggcaaagaaagcatcgcgattacattatataatgaggatgagtcgccacta
caagtgtcgttgctaacaaaggatttacctaacgaaaaacagctaaatgaagtactttat
tatttgcaattacaagaacaaggtattcgccttaatgaactgagacttattcaagaaaca
ggaattacagaaattatgtggagattcatccgctttcatctagaagaacaaggcagaatt
attgatcaaaaatatcgaataacagaggttaatcaagagagaagtcagcagtctattcaa
aagaaaattaatgaaagaattgactataagctaaaaaaactaactcagtttcaggcttgg
cttaagcaagcagagagttgtagaagagagcttgtgctagcccaatttgatgaacgtttg
atgaagaaaagtgaaaaatgttgtgacaagtgtggaataaacattgaggattactatgat
aaacaaccaagtgtaaacaaaccattgattcgaacttggcaaggggagttaaagagttta
tttgaataa
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