Bacillaceae bacterium IKA-2: RJD24_13025
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Entry
RJD24_13025 CDS
T10990
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bbam Bacillaceae bacterium IKA-2
Pathway
bbam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RJD24_13025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbam03019
]
RJD24_13025
03009 Ribosome biogenesis [BR:
bbam03009
]
RJD24_13025
Enzymes [BR:
bbam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RJD24_13025
Messenger RNA biogenesis [BR:
bbam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RJD24_13025
Ribosome biogenesis [BR:
bbam03009
]
Prokaryotic type
rRNA helicases
RJD24_13025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
WNF35383
LinkDB
All DBs
Position
complement(2662824..2664416)
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AA seq
530 aa
AA seq
DB search
MMYFDDFQISTDLKKAVKEMGFEAPSPIQEKVIPLILDGGDVIGQAQTGTGKTAAFGIPL
LDKVTTSPHVQAIIITPTRELAIQVAAELQQLSKFKRTRTLPIYGGQSIGHQIRALNQGV
HVVIGTPGRVLDHLRRKTLKLDRVHTVVLDEADEMLDMGFVEDIELILKEVSSDRQTLMF
SATMPNAIVKLSRKYMKQPKVVSINKGEVTAPSIDQIYFKVLEKNKLDSLCRIIDSEEID
LGIIFCRTKKGVDELTEALQARGYMADGLHGDLTQMQRDSVMKKFRDATIEFLIATDVAA
RGIDVQNVTHVINYDIPQDPESYVHRIGRTGRAGRKGLALTLVTPREMKHLRSIELEIKM
TLPSRNIPTIEDVVEKQQESWKQQLVNIIQSNEQPVLFDPLIKEMLSDHPAEKVVGALMK
VAFHHEFDAGDDSYNFGDTGAAKGMVRFFINVGRNVKLTPKIIMDEVSELVGIAAKAIGR
IDIFENFTFLEVPEESAPFVYEALRYSRLNGARVNLEPAKPRPKRDGNFK
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgatgtattttgatgattttcaaatttcaactgatttaaaaaaagcagtaaaagagatg
ggcttcgaagcgccatcgccaattcaagaaaaagttattccactcattcttgatggtggc
gatgttattggacaagcgcaaacaggtacagggaaaacagctgcatttggaatacctttg
ttagacaaagtaacaacgtcacctcatgttcaggcgattattataacaccgacaagagag
ttagcaattcaagtggcggctgagctacaacagctttcgaaatttaaacgaacccgaact
ttaccgatttatgggggccaatcaattggccatcaaattcgcgccttaaatcaaggagtt
catgttgtgattggaactccaggccgtgtccttgatcatctgcgtcgcaaaacattaaaa
ctagaccgagttcatactgtagtgttagacgaagccgatgaaatgttagatatgggtttt
gttgaagatatagagttgattttaaaagaagtaagtagtgatcgacaaacacttatgttt
tctgcaacgatgccaaatgcgatcgtcaagctgtcgcgaaaatatatgaaacaaccaaaa
gtcgtttcaattaataaaggggaagtaactgccccgtctatagaccaaatttactttaaa
gtgttagaaaaaaataagttagattcactttgccgaattatcgatagtgaagagattgat
ttaggaattattttttgccgcacaaaaaaaggtgttgatgagcttactgaagccttacaa
gctcgtggttatatggctgatggtcttcatggtgatttaacacagatgcaacgtgatagt
gttatgaagaaattccgcgatgcaacaattgaatttctaatcgcaacagacgttgcggca
aggggaattgatgtccaaaacgttactcatgtcatcaattatgacattccgcaagatcct
gaaagctatgttcatcggattggtcgcactggacgtgcaggacgaaaaggattagcatta
accttagtaactccaagagaaatgaagcatttacgttcgattgaattggaaattaaaatg
actttaccgtctcgaaatatcccaacaattgaagatgttgttgaaaaacagcaagaatca
tggaagcaacaattagtaaatattattcaatcaaatgaacaaccagttctctttgatcca
ttaattaaggaaatgctttctgatcacccggccgaaaaagttgtcggtgcattaatgaaa
gttgcctttcatcatgaatttgacgcaggagatgatagctataattttggagatacagga
gcggctaaaggaatggtacgtttctttattaacgtcggaagaaatgtcaagttaactcca
aaaattattatggatgaggtttccgagttggtagggattgcggcgaaagccattggcaga
attgatatttttgaaaactttacttttcttgaagttccagaagaaagtgctccatttgta
tacgaagcgcttcgctattcaagattaaatggtgctagagttaatttagaaccagcaaaa
ccaagaccgaaacgagatggtaatttcaagtaa
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