Bacillaceae bacterium IKA-2: RJD24_13495
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Entry
RJD24_13495 CDS
T10990
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bbam Bacillaceae bacterium IKA-2
Brite
KEGG Orthology (KO) [BR:
bbam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbam03032
]
RJD24_13495 (topA)
03400 DNA repair and recombination proteins [BR:
bbam03400
]
RJD24_13495 (topA)
Enzymes [BR:
bbam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RJD24_13495 (topA)
DNA replication proteins [BR:
bbam03032
]
Prokaryotic type
DNA Topoisomerases
RJD24_13495 (topA)
DNA repair and recombination proteins [BR:
bbam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RJD24_13495 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Toprim_3
Motif
Other DBs
NCBI-ProteinID:
WNF35469
LinkDB
All DBs
Position
complement(2758568..2760637)
Genome browser
AA seq
689 aa
AA seq
DB search
MADYLVIVESPAKAKTIGKYLGKKYIVKASMGHVIDLPKSQMGVDTEDNFTPKYITIRGK
GPILKDLKAAAKKVKKIYLAADPDREGEAIAWHLAHSLKIDESSNCRVVFNEITKQAIKD
AFKTPRPVDMDLVDAQQARRVLDRLVGYNISPLLWKKVKKGLSAGRVQSVAVKMIIDREK
EVQAFIPEEYWSITARFKVAEEIFEAKFFGLDNKKQELKTEAEVNEVLSKLKDTFIVESV
KKKERKRNTVLPFITSSLQQEAARKLNFRAKKTMMIAQQLYEGIDIGKEGTVGLITYMRT
DSTRVSETAEKESVEYIETHYGPEYLLKEKRPVKKDKKSQDAHEAVRPTSVFKDPKSMKT
YLSRDQFRLYKLIWERLLASQMAPAVLDTMSVDINNEGVLFRATGSKIKFPGFMKVYIEG
NDDGKKEEDRLLPHLEEGMTVSKETIEPNQHFTQPPPRYTEARLVKTLEDLGIGRPSTFA
PTLDTIQRRGYVALEDKRFIPTELGGIVLELIFEFFSEILDVEFTAKMESDLDSIEEGKT
NWVTVIDHFYKGFEKNLKIAEEEMKEVEIKDEPAGEDCEFCGNAMVYKMGRYGKFMACSN
FPECRNTKAIVKDIGVKCPKCEDGNIVERKSKKRRTFYGCDQYPKCEFISWDKPISRDCP
KCSEMLIEKKTKKGIHVQCAKCDYEEEAN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcagattacttagtaatcgttgaatctcccgctaaggcaaaaacaattggtaagtat
ttagggaaaaaatatatagtgaaggcttccatggggcatgtaattgacttaccaaaaagt
caaatgggtgttgatactgaagataactttactcctaaatatattacaattcgcggtaaa
ggaccaatccttaaggacttaaaagcggctgccaaaaaagtaaagaaaatttacttagca
gctgacccggatcgcgaaggagaagcaattgcttggcacttagcacacagtttgaaaatt
gacgaatcatcaaactgtcgagtagtattcaacgaaataacaaagcaagccatcaaggat
gcttttaaaacacctagaccagtagatatggacttagttgatgcacaacaagcgaggcga
gtgctcgatcgtttagtaggttataatattagccctttactatggaagaaagtaaaaaag
ggtttaagtgcgggaagggttcaatcagttgctgtcaaaatgattattgatcgagaaaaa
gaagtgcaagcttttattcctgaagaatattggtcaattacagcccgatttaaagtagct
gaggaaatttttgaagcaaaattttttggccttgataacaagaaacaagagttaaaaact
gaagcagaagtaaatgaagttttaagtaagcttaaagatacatttattgttgaaagcgtc
aaaaaaaaggaacgaaaacgaaataccgttttaccttttatcacttcttccctccaacaa
gaggctgctagaaaacttaatttcagagcgaaaaaaacaatgatgattgcccagcagctt
tatgaaggtattgatattggtaaagaaggaacagtagggttaattacatatatgagaact
gattcaacgagagtatctgaaacagcagaaaaagaatctgtcgagtatattgaaactcat
tatggtcccgagtacctattaaaagaaaaacgcccagtcaaaaaagataaaaaatctcaa
gatgcccatgaagcggttagaccgacttcggtttttaaagatccgaaatcgatgaaaact
tatttaagtagggatcaatttcgactttataaattaatttgggaaagattattagcgagc
caaatggcaccagcagtactagatacaatgagtgttgatattaacaatgaaggagtcctg
ttccgcgcaaccggctcgaaaattaaatttccaggtttcatgaaagtatatatcgaagga
aatgatgacggaaagaaggaagaagatcgcctcttacctcatttagaagaagggatgaca
gtttctaaagaaacgattgagccaaatcagcattttactcagcctccacctcgttatact
gaggcaaggcttgtaaagactttggaagacttaggaattggcagaccttccacttttgca
ccgacgctagatacaattcagagaagagggtatgtagcccttgaagataaacgttttata
cctactgaattaggaggaattgtcttagagttaatttttgagtttttctccgaaatttta
gatgtcgagtttacagcaaaaatggaaagcgacctagattcaattgaggaaggcaaaaca
aattgggtaaccgtcattgaccatttctataaaggttttgaaaaaaaccttaaaatagcc
gaagaagaaatgaaagaagtagaaataaaagatgagccagctggagaagattgtgagttc
tgcggcaatgcaatggtttataaaatgggacgttatggtaaatttatggcttgctccaat
tttccagaatgtcgaaatacaaaagcaattgtcaaggatattggtgtaaagtgtcccaaa
tgtgaagatggaaatattgttgagagaaaaagtaaaaaacgaagaacgttttacggctgc
gatcaatacccgaaatgtgagtttatttcatgggataaacctatttcaagggactgtcca
aaatgcagtgaaatgctaattgagaagaaaacgaaaaaaggcatccatgtgcaatgtgca
aagtgtgattatgaagaagaagcaaattaa
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