Bacillaceae bacterium IKA-2: RJD24_14295
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Entry
RJD24_14295 CDS
T10990
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bbam Bacillaceae bacterium IKA-2
Pathway
bbam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RJD24_14295 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbam03019
]
RJD24_14295 (rnjA)
Messenger RNA biogenesis [BR:
bbam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RJD24_14295 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
DUF5107
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
WNF39048
LinkDB
All DBs
Position
2923877..2925544
Genome browser
AA seq
555 aa
AA seq
DB search
MKQVKNNQTAVFSLGGLGEIGKNTYAVQFQDEIIIIDAGIKFPEDELLGIDYVIPDYTYI
VKNIDKVKGLFITHGHEDHIGGIPYLLKQVNVPIYGGKLALGLLKGKLEEHGLLRKTTMH
EIHEDEVIKFTKTSVSFFRTTHSIPDSYGVVVHTPAGNIVQTGDFKFDFTPVGEPANLTK
MAQIGQEGVLCLLSDSTNSEIPGFTMSERKVGESIDAIFRKVDGRLIFATFASNIYRLQQ
VIEAAVINKRKVAVFGRSMESAIRIGQELGYIRAPQGTFIEHNQINKLPASEVTLLCTGS
QGEPMAALSRIAFGTHRQIQIIPGDTVVFSSSPIPGNNLSVSKIINQLYRAGAEVIHGSL
SNVHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMLKTHVKLAVECDIPEENCFVMDIGE
VLALSQDEAAVVGKVPSGTVYVDGNGIGDIGNIVLRDRRILSEEGLVVVVVSLNMKEFKV
TAGPDIISRGFVYMRESGDLINDAQSLLAKHLQSIMERKTTQWSEIKNEISDVLGPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
attaaacaagttaaaaataaccaaactgctgttttttccctcgggggcttaggtgaaatc
ggaaaaaatacttatgctgttcagtttcaagatgaaattattatcatcgatgctggaatt
aagtttcctgaggatgaacttttaggaattgattatgtaattcctgattatacgtatata
gtcaaaaatatcgataaagttaaaggtttatttattactcatgggcatgaagaccacatt
ggcggtattccatatcttttaaaacaagtaaatgttcctatttatggtgggaagctagca
ctaggtttattaaaaggaaaattagaagagcacggtttgcttcgaaaaacaacgatgcat
gaaattcatgaagatgaagtaattaaatttactaaaacgtctgtatctttctttcggaca
actcatagtattccagattcatacggagtagttgttcatactccagcaggaaatatcgtt
caaactggcgatttcaaatttgattttacacctgttggtgaaccagctaatttaacaaag
atggcgcaaattggacaagaaggtgttctatgtctcttatctgatagcacaaacagtgaa
attcctggattcacgatgtctgaaagaaaagttggtgaaagtattgatgcgatttttcgt
aaagtagatggacgacttatatttgctactttcgcctcaaatatttaccgccttcaacaa
gtgatcgaagctgctgttattaataagcgtaaggtagcagtttttggaagaagtatggaa
tcagcgattaggattggacaagaattaggttatattcgcgctccacaaggaacattcatc
gaacacaatcaaatcaataaactacctgccagtgaagtaacgttattatgtacaggcagt
caaggtgagcctatggccgctttatctcgtattgcattcggcacacatcgccagatccaa
attattcctggtgatacggttgttttttcatcatcacctattccgggaaataacttgagt
gtaagtaaaataattaatcaattataccgagcgggagcagaagtaatccacggatcatta
agtaacgttcatacttcaggacatggtggtcaagaagaacaaaagcttatgattcgttta
atgaaacccaaatattttatgccaattcacggtgagtaccgcatgttgaaaacacatgtt
aaattggctgtagagtgcgatatcccagaggaaaattgttttgtgatggatattggtgaa
gttttggctcttagtcaagatgaagctgccgtggttggaaaagttccatctggtacggtt
tatgtagatggtaacggtattggcgacattggtaatattgtgcttcgcgatcgtcgaatt
ctatcagaagaaggtcttgtagttgttgttgtcagcttaaacatgaaagagtttaaagtt
acagcaggtccagacattatctcaagaggatttgtttatatgcgagaatctggggactta
attaatgacgcgcaatcgttattagctaaacatttacaatcgataatggaacgaaaaact
actcagtggtcagaaattaaaaatgaaatcagcgacgtattaggaccatttttatacgaa
aaaacaaaacgccgaccgatgatactaccaatcataatggaagtgtga
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