Bradyrhizobium barranii subsp. barranii: J4G43_022795
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Entry
J4G43_022795 CDS
T08665
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bban
Bradyrhizobium barranii subsp. barranii
Brite
KEGG Orthology (KO) [BR:
bban00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bban03016
]
J4G43_022795
Enzymes [BR:
bban01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J4G43_022795
Transfer RNA biogenesis [BR:
bban03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J4G43_022795
Prokaryotic type
tRNA splicing ligases
J4G43_022795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Reg_prop
Motif
Other DBs
NCBI-ProteinID:
UEM16793
UniProt:
A0A939S4Z2
LinkDB
All DBs
Position
complement(4794222..4795562)
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AA seq
446 aa
AA seq
DB search
MRRSDPYMERAPELCLAVGVDPDSRVGEGRGQPAWCLYKDAARKEHLAREANATADAIAQ
LHPQEARFQNAPLKIFGPHEEATIAQMRNCMAVGNVVSGVICADGHLGYAQPVGGVIAYE
KQISISGVGFDIGCGNMAARLDTRFDDIAAIVPTIIRDVAKVISFGVGRANAERAEHELF
DDGDAWRESDMEAYRQKAVAQLGTVGSGNHYVDLMRDEEGFVWIGVHFGSRGLGHTSATR
YLKAAGGKDGMNVPPAVVDEESELGRRYIAAMQLAGRYAYAGREWVVERVRQIIGGRATE
SVHNHHNYAWRETHDGRDLWVVRKGATPAFPGQKGFVGGSMGDDAVILEGVDSPEARASL
YSTVHGAGRMFGRKEAKRRFSRAEMDHWLNERGVTLIGADLDESPMAYRRLPDVLAQHAG
TVRVLHTLRPFAVAMAGEGEFDPWKD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgatctgatccctacatggaacgcgccccagagctctgcctcgccgtcggcgtc
gatccggactcgcgcgtcggtgaaggacgcggccagccggcctggtgcctgtacaaggac
gccgcgcgcaaggagcatctggcacgcgaggccaatgcgacggccgacgcgatcgcgcag
ctccatccgcaggaggcccgctttcagaatgcgccgctgaagatttttggcccgcatgag
gaagcgaccatcgcgcagatgcgcaactgcatggcggtcggcaatgtcgtgtccggcgtg
atctgcgccgacggccatctcggctacgcccagccggtcggcggggtcatcgcctacgag
aagcagatcagcatctccggcgtcggcttcgacatcggctgcggcaacatggccgcacgg
ctcgacacgcgcttcgacgacattgcggcgatcgtgcccacgatcatccgcgacgtcgcc
aaggtcatctcgtttggtgttggtcgcgccaacgccgaacgggccgagcacgagctgttc
gacgacggtgacgcctggcgcgagagcgacatggaagcctaccgtcagaaggcggtggcg
cagctcggcacggtcgggtcgggcaaccactatgtcgacctcatgcgcgacgaggaaggt
tttgtctggatcggcgtccacttcggaagccgtggtctcgggcatacttccgcgacgcgc
tacctcaaggccgccggcggcaaggacggcatgaacgtcccgcccgccgtcgtcgacgag
gagtccgagctcggccgccgctacatcgcggcgatgcagctcgccgggcgttatgcctat
gcgggccgcgagtgggtcgtcgaacgcgtccgtcagatcatcggcggccgcgcgaccgag
agcgtgcacaaccaccacaactacgcctggcgtgagacccacgacgggcgtgatctgtgg
gtggtgcgcaagggcgcgacgccggcgtttcccggccagaagggattcgtcggcggctcg
atgggggacgacgccgtcattctcgaaggcgtcgacagtccggaagccagggcttcgctt
tactcgaccgtacacggcgccggccgcatgttcggacgaaaggaggcgaagcggcgcttc
tcgcgtgcggagatggaccactggctgaacgagcgtggcgtcaccttgatcggtgccgac
ctcgacgagagcccgatggcctatcgccgcctgcccgacgtgctcgcgcagcatgccggc
accgtgcgggtgctgcacacgctgcggccgttcgccgtcgccatggccggtgaaggcgag
ttcgacccctggaaggactga
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