Bradyrhizobium barranii subsp. barranii: J4G43_023485
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Entry
J4G43_023485 CDS
T08665
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bban
Bradyrhizobium barranii subsp. barranii
Brite
KEGG Orthology (KO) [BR:
bban00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bban03016
]
J4G43_023485 (rnd)
Enzymes [BR:
bban01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
J4G43_023485 (rnd)
Transfer RNA biogenesis [BR:
bban03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
J4G43_023485 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
UEM16924
UniProt:
A0A939S539
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Position
complement(4932295..4933464)
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AA seq
389 aa
AA seq
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MDLITTTADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASPEEAIVIDTLAEGI
DLKPFFDLMGNEGVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAAMVLGYGDSIAYDAL
VEKVAGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEWVSI
EMEVLTSPRTYDFHPERAWERLKTRVRKPKDLAVLMEVAAWREQEAQSRDVPRGRVLRDE
AISDIATHAPNTLEKLAHLRSVPKGFEKSKWGADIVAAVERGLARDFATLPKLEKPRNNN
NGAAIVELLKVLLRMTAERHAVASKVIATVDDLEEIAADDEADVPALRGWRRELFGDAAL
KLKRGELALAIEKGRVIGVQRVEPVKPSS
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggatttgattaccaccaccgctgacctcgcggctgcctgcagccggctggccaagcac
cccgttattacagtcgataccgagttcctgcgcgaaaccacctactacccgctgctgtgc
gtggtgcagatggccagccccgaggaagcgatcgtcatcgacaccctggccgaggggatc
gacctcaagccgttcttcgacctgatgggcaacgagggcgtgctgaaggtattccatgcc
gcccgccaggacatcgagatcatctggcaccaggccaacatcatcccgcacccggtgttc
gacacccaggtcgcggccatggtgctcggctatggcgacagcatcgcctatgacgcgctg
gtcgagaaggtcgcgggccaccgcccggacaagacccaccgcttcaccgactggtcgcgc
cggccgctgacgaaagagcagatgcactacgcggtgtccgacgtcacgcacctgcgcgac
gtgttcgccgcgctcgatgccgacctcaagaagcggcgccgcagcgagtgggtctccatc
gagatggaggttttgacctcgccccgcacttacgacttccaccccgagcgcgcctgggaa
cggctgaagacgcgggtccgcaagcccaaggacctcgcggtcctgatggaggtcgcggcc
tggcgcgagcaggaagcgcagagccgcgacgtgccgcgcggccgcgtgctgcgtgatgaa
gccatcagcgacatcgcgacccacgcgccgaacacgctggagaagctcgcccatctgcgc
tcggtgccgaaggggttcgagaaatccaaatggggcgcggacatcgtcgccgcggtcgag
cgcgggctggcgcgggatttcgcgacgctgccgaagctggagaagccgcgcaacaacaac
aatggcgccgccatcgtcgagctgttgaaggtgctgctgcgcatgaccgcggagcgccac
gcggtcgccagcaaggtgatcgccactgtcgacgatctcgaagagatcgcagcggacgac
gaggccgacgtgccggccttgcgcggctggcgccgcgagttgttcggcgacgccgccttg
aagctcaagcgcggcgagctggcgctcgcgatcgagaaaggccgcgtgatcggggtccaa
cgggtggagccggttaaaccgtcatcctga
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