Bradyrhizobium barranii subsp. barranii: J4G43_027595
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Entry
J4G43_027595 CDS
T08665
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bban
Bradyrhizobium barranii subsp. barranii
Pathway
bban03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bban00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J4G43_027595 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bban03400
]
J4G43_027595 (mfd)
Enzymes [BR:
bban01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4G43_027595 (mfd)
DNA repair and recombination proteins [BR:
bban03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J4G43_027595 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
SecA_DEAD
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UEM08545
UniProt:
A0A939S5V9
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All DBs
Position
complement(5737252..5740770)
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AA seq
1172 aa
AA seq
DB search
MKQGMKSPAELLTPGRALTLANVAEGAEGLVISDLARAIAARPKKPAVSLAVVCRDGGRM
QQLERALQFFAPDLPVLTFPAWDCQPYDRVSPHGGILAQRLTTLARLAPLTGSDKPLIVL
TTVNAIVQRVPARELVAAQALSVAPGNVVPMDTIIAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRSFDAETQRTMLDMRSLDLVPISEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAAIAIEPQAE
DAVRERFKQIQDYYEARRDAMEHPGGGAIYKPLPPDRLYLTDEEWTRRESEMSLVRLTQF
SVPADGATIVDAGARKGRDFAPERNDATVNVFESVVSHVMALHAQRKKVVIALWSEGSRD
RMTSMLRDHKLTHTTSVNAWRTVQATPRNETMLAVLGLESGFETDEIALISEQDILGDRL
VRPRKASRKLDNFISEVTSLAAGDIVVHADHGIGRFIGLQTLDVAGAPHDCLELHYAADA
KLFLPVENIELLSRYGSDQTTVELDRLGGSGWQTRKAKLKNRIREIAGELIKIAAARHLH
EAPKLPVQPGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHHKTFTDRFKGFPVNVAQASRLVPTKELNLVKKG
IADGSVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVTHKERLKALRSEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLTVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVSEPAADRW
SPSITIGMPVLIPEDYVGDLSVRLSLYRRLADLDTEEEIENFGSEMRDRFGVLPDEVRYL
FKVAAIKAFCRTANVGKIDAGPKGAVIAFRDNSFAHPDRLVSFIRSYGQAAKVRPDMKVV
FLQDWETPEERLAGTTEIMRQLAQLAQSKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaggggatgaagtcgccggccgagctgcttacgcccggccgcgcgctgacgctt
gccaatgtagccgagggcgccgagggcctcgtcatctccgatctcgcccgcgccatcgcg
gcgcggccgaagaaaccggccgtcagccttgccgtggtctgccgcgacggcgggcgaatg
cagcagctcgaacgcgcgctgcaattcttcgcgcccgatttgccggtgctgacctttccg
gcctgggactgccagccctatgaccgcgtctcgccccatggcggcatcctggcgcagcgc
ctgaccacgctggcgcggcttgcgccgctgaccggcagcgacaagccgctgatcgtgctc
accacggtgaacgcaatcgtgcagcgcgtgcctgcgcgcgaactcgtcgccgcgcaggcg
ctgtcggttgcgccgggcaacgtggtgccgatggacaccatcatcgcctggctcgagcac
aacggctacaaccgctcctcgaccgtgcgcgagcccggcgaatatgccgtgcgcggcggc
atcctggatctgtttccggccggcctcgaccagccggtccgcttcgacttcttcggcgac
agcctggaatcgatccgctccttcgacgccgagacccagcgcacgatgctcgacatgcgc
tcgctcgacctcgtgccgatctcggaattccagctcgtcaccgacaccatccgccgcttc
cgcatgggctatgtcgccgagttcggcgcgcccgagcgcgacgatgcgctgtacgaggcc
gtcagcgagggccgccgccatcccggcatggagcactggctgccgctgttccaggaccgg
atggacacgctgttcgactatctgcaaggcgcggccatcgcgatcgagccgcaggccgag
gacgcggttcgcgagcgcttcaagcagatccaagattactacgaagcccgccgcgatgcg
atggagcatcccggcggcggtgcgatctacaagccgctgccgcccgacaggctctatctc
accgacgaggaatggaccaggcgcgaaagcgagatgtcgctggtgcggctgacgcagttt
tcggttccggccgatggtgcgacgatcgtcgacgccggcgcgcgcaagggccgcgacttc
gcacccgaacgcaacgacgccaccgtcaacgtgttcgagtccgtcgtcagccacgtgatg
gcgctgcatgcccagcgcaagaaggtcgtgatcgcactctggagcgagggatcgcgcgac
cgcatgacctcgatgctgcgcgaccacaagctgacccacaccaccagcgtcaacgcctgg
cggacggtgcaggcgaccccgcgcaacgagaccatgctcgccgtgctcggcctcgaaagc
ggtttcgagaccgacgagatcgcgctgatcagcgagcaggacatccttggcgaccgcctg
gtccggccccgcaaggccagccgcaagctcgacaatttcatctcggaggtgacgagcctt
gccgcgggcgacatcgtcgtccatgccgaccacggcatcggccgcttcatcggcttgcag
acgctcgacgtcgccggcgcgccgcatgactgtcttgagctgcattacgccgccgacgca
aaactgtttctgccggtcgagaacatcgagctgttgtcgcgctacggctccgaccagacc
acagtcgagctggatcgtctgggcggaagcggctggcagacccgcaaggccaaactcaag
aaccgcatccgcgagattgcgggcgagctgatcaagatcgccgccgcgcgccatttgcac
gaggcgccaaagctgccggtgcagccgggactttacgacgagttctgcgcgcgcttcccc
tatgacgagaccgaggaccagttaggggccatcgaatccacgctgaaggaccttgagctc
ggccgtccgatggaccggctgatctgcggcgacgtcggcttcggcaagaccgaggtggcc
ttgcgcgcggcctttgccgttgcgctcgaaggcaagcaggtcgcggtcgtggtgccgacc
acgctgctcgcccgccagcaccacaagaccttcaccgaccgcttcaagggctttccagtg
aatgtggcgcaggcctcgcgcctggtcccgaccaaagagctgaacctggtcaagaagggc
attgccgacggctcggtcgacatcgtcgtcggcacccacgcgctgctcggcaaggcgatc
aagttccgcgatctcggcctcgttatcgtcgacgaggagcagcattttggcgtcacccac
aaggaacggctaaaggcgcttcgctccgaggtgcacgtgctgacgctgtcggcgacgccg
atcccgcgcacgctgcaactggcgttgaccggcgtccgcgagctctcgatcattgcatcg
cccccggtcgaccggctcgcggtgcgcaccttcgtcgctccgcatgatccgctgatgatc
cgcgaggcgctgctgcgcgagcgctatcgcggcggccaggcgttctacgtggtgccgcgc
atcgacgacctcgccgaggtcaaggacttcctcgacaagaacgtgccggagatgaaggtc
gcggtcgcgcacggccagatgccgcccgcggtgatcgaagacatcatgaccgccttctac
gacggcaagttcgacatcctgctgtcgaccaccatcgtggagtccggcctcgacattccc
aacgccaacacgctgatcgtgcaccgtgccgacatgttcggcctggcgcagctgtatcag
ctccgcggccgcgtcggccgctccaagctgcgagcctatgcgctgttcacgctgccggcg
cagcagaagatcaccgcgcaggccgagcgccggctcaccgtgttgcaatcgctggagacg
ctgggcgcgggcttccagctcgcctcgcacgacctcgacatccgcggcgccggcaacctg
ctcggcgaggagcagtccggccacatcaaggaagtcggcttcgagctctaccagtcgatg
ctggaggaggcgatcgtcaacctcaaggccggcgtgtccgagcccgccgccgaccgctgg
tcgccctcgatcaccatcggcatgcccgtgctcattccggaagactatgtcggcgacctc
tcggtgcggctgtcgctgtaccggcggctggccgatctcgacaccgaggaggagatcgag
aactttggctcggagatgcgcgaccgtttcggcgtgctgcccgacgaggtgcgctatctg
ttcaaggtcgccgcgatcaaggcgttctgccgcacggccaatgtcgggaagatcgacgcc
ggtccgaagggcgcggtcatcgccttccgcgataattcgttcgcccaccccgaccgcctg
gtgtcgttcatccgcagctacggccaggccgccaaggtgcggcccgacatgaaggtggtg
ttcctgcaggactgggagacgccggaagagcgtctcgccggcaccacggagatcatgcgg
cagctggcacagctggcgcagagcaagaaggcggcgtaa
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