Bradyrhizobium barranii subsp. barranii: J4G43_032435
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Entry
J4G43_032435 CDS
T08665
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bban
Bradyrhizobium barranii subsp. barranii
Pathway
bban03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bban00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J4G43_032435 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bban03021
]
J4G43_032435 (rpoC)
03400 DNA repair and recombination proteins [BR:
bban03400
]
J4G43_032435 (rpoC)
Enzymes [BR:
bban01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J4G43_032435 (rpoC)
Transcription machinery [BR:
bban03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J4G43_032435 (rpoC)
DNA repair and recombination proteins [BR:
bban03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J4G43_032435 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
DUF2130
Motif
Other DBs
NCBI-ProteinID:
UEM09422
UniProt:
A0A7Z0TVU8
LinkDB
All DBs
Position
complement(6626754..6630950)
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AA seq
1398 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGMDLEKLEATLRLEMQETDSDIKHKKLAKRLKIVEAFRHSGNKPEWMI
MTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYVSIMREGLPGEGKIFGDMAELEHALH
AKVIHLHTKIKYRWQGMDETGKVSTRWIETTAGRVMLGNLLPKNPRISYEIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHSKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKAMMKEISSTKKTASGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQNDCGTKLGIKMRAIVDAGTVVASLGSRILGRTA
CEDVRDSSGKVIIKRGTLMEESHLDAIHQGGVQEVKIRSALTCELVNGICGMCYGRDLAR
GTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSFVESNFDGKIVIRNKAIA
RNSEGHLVAMVRNMVIAIVDADGTERATHRIQYGSRLHVDEGDTVKRGQRIVEWDPYTRP
LLTEVEGTIGFEDLVEGQSISETLDEATGIAKRVVIDWRSTRGGADLRPAIVVKGKDGKV
LKLARGGDARYMLSVDAILSVDVGAKVNTGDILARVSTESAKTRDITGGLPRVAELFEAR
RPKDAAIIAEISGTIRFGRDYKNKRRISIEPMDKTDEAREYLIPKGKHIHLQDGDVVEKG
DFIVEGNPAPHDILAVKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVT
DQGDTDMISGEQVDKIEFDALNEKAKEEGKKIATGTPVLLGITKASLQTRSFFSAASFQE
TTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAMKRDKLILDEREKQA
AVVSPAPEAELPALPPAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaattatgaatctcttcaacccgacgactccggctcaggtcttcgaccag
atccggatttcgatcgcgtctcctgagaagattctgtcctggtcctacggcgagatcaag
aagccggagaccatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaggtcacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgagctcgcagcccccgtcgcccacatctggttcctgaagtcg
ctgccctcgcgcatcggccttctgctggacatgacgctgaaggatctcgagcggatcctc
tacttcgaatattacgtcgtgctcgagccgggcctcaccgcgctcaaggaccgtcagctc
ttgtcggaagacgagtatctgaaggcgcaggacgagtacggtcaggattccttcaccgcc
atgatcggcgcggaagcgatccgcgagctgctcaagggcatggacctcgagaagctcgaa
gccaccttgcgcctcgagatgcaggagaccgactccgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtggaagcgttccgccactccggcaacaagccggaatggatgatc
atgaccgtggttccggtgattccgccggacctgcgtccgctggtgccgctggacggcggc
cgcttcgcgacctcggacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ttgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgagaagcgcatg
cttcaggaagcggtcgatgcgctgttcgacaacggccgccgcggccgcgtcatcacgggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctcaagggcaagcagggtcgcttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcgcctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctactcgcggcttgacgccaagggcctgtccaccaccgtgaagcaggcgaag
aagctggtcgagaaggagcggcccgaggtctgggacatcctggacgaggtcatccgcgag
catccggtgctgctcaaccgcgcaccgacgctgcatcgtctcggcatccaggcgttcgag
cccgtgctgatcgagggcaaggcgatccagctgcatccgctggtctgcgccgcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggtctctactacgtctcgatcatgcgcgaa
ggcctgcccggcgagggcaagatcttcggcgacatggccgagctcgagcacgcgctgcac
gcgaaggtcatccacctccacaccaagatcaagtatcggtggcagggcatggacgagacc
ggcaaggtctcgacgcgctggatcgagaccaccgcgggtcgcgtcatgctcggcaatctg
ctgccgaagaacccgcggatttcgtacgagatcatcaacaagctgatgaccaagcgcgaa
atctcgggcgtcatcgaccaggtctaccgtcactgcggccagaaggagactgtgatcttc
tgcgaccgcatcatggcgctcggcttctacaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtcgtgccgcactccaagtggaagatcgtcgacaccacccgtacgctg
gcgaaggatttcgagcagcagtacaacgacggtctgatcacccatggcgagaagtacaac
aaggtcgtcgacgcctggtcgaaggccacggaagaaatcgccaaggcgatgatgaaggag
atctcctcgaccaagaagacggcgagcggggcggatgccgacatcaactcgatctacatg
atggctcactccggtgcccgcggttcgccggcccagatgcgccagctcgccggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggtgctcgagtacttcaactcgacccacggcgcccgtaagggcctcgcg
gacaccgcgttgaagaccgcgaactcgggctacctgacccgtcgtctcgtcgacgtggcg
caggactgcatcatcacgcagaacgactgcggcaccaagctcggcatcaagatgcgcgcc
atcgtcgatgccggcaccgtggtcgcctcgctcggctcgcgcatcctcggccgtacggcc
tgcgaagacgtgcgtgacagctcgggcaaggtgatcatcaagcgcggtacgctgatggaa
gagagccatctggacgccatccaccagggtggcgtgcaggaggtgaagatccgctcggca
ctgacctgcgagctcgtcaacggcatctgcggcatgtgctacggccgcgacctcgcccgc
ggcacgccggtcaaccacggtgaagccgtcggcgtcatcgcggcgcagtcgatcggcgag
cccggcacccagctgaccatgcgcaccttccacatcggtggtgcggcgcagctcaacgag
cagtcgttcgtcgaatccaacttcgacggcaagatcgtgatccggaacaaggccatcgcc
cgcaacagcgaaggtcacctggtcgcgatggtccgcaacatggtgatcgcgatcgtcgat
gccgacggcaccgagcgtgcgacgcaccgtatccagtacggttcgcgcctgcacgtcgac
gagggcgacaccgtcaagcgcggccagcgcatcgtcgagtgggatccctacacccgtccg
ctgctcaccgaagtcgaaggtaccatcggcttcgaggatctggtcgaggggcagtcgatc
tcggaaacgctcgacgaggccaccggtatcgccaagcgcgtggtcatcgactggcgctcg
acccgcggcggcgcggacctgcgtccggccatcgtggtcaagggcaaggacggcaaggtg
ctcaagctcgcccgtggcggcgatgcccgctacatgctgtcggtcgatgccattctctcg
gtcgacgtcggagccaaggtcaatacgggcgacatcctcgcccgtgtctcgaccgaaagc
gccaagacgcgtgacatcaccggcggtctgccgcgggtggcggaactgttcgaggcacgg
cgtccgaaggatgcggcgatcatcgccgaaatctcgggcaccatccggttcggacgcgac
tacaagaacaagcgtcgcatctcgatcgagccgatggacaagaccgacgaggcacgcgag
tacctgatcccgaagggcaagcacatccaccttcaggacggcgacgtcgtcgaaaagggc
gacttcatcgtcgaaggcaacccggcgccgcacgacatcctggcggtcaagggcatcgag
gagcttgcggcctatctggtcaacgagatccaggaggtctaccggctccagggcgtgctc
atcaacgacaagcacatcgaggtgattgtccgtcagatgctccagaaggtggaagtcacc
gaccagggcgacacggacatgatctccggcgagcaggtcgacaagatcgagttcgacgcg
ctcaacgagaaggcgaaggaagagggcaagaagatcgctacgggaacgccggttctgctc
ggcatcaccaaggcgagccttcagacccgctccttcttctcggcggcctcgttccaggag
accacccgcgtcctcacggaagcggcggtcaacggcaaggtcgatccgctcgaaggcctc
aaggagaacgtcatcgtcggccggctgatcccggcgggcaccggcgcctccatggccaag
atccgcgaagtcgcgatgaagcgcgacaagctgatcctggacgagcgcgagaagcaggcg
gccgtcgtgtcgcccgcgccggaagcggagcttcctgcgctgcctcctgcggaataa
DBGET
integrated database retrieval system
