Beijerinckiaceae bacterium RH AL1: RHAL1_00145
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Entry
RHAL1_00145 CDS
T06029
Name
(GenBank) Murein L,D-transpeptidase YcbB/YkuD
KO
K21470
L,D-transpeptidase YcbB
Organism
bbar
Beijerinckiaceae bacterium RH AL1
Brite
KEGG Orthology (KO) [BR:
bbar00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
bbar01002
]
RHAL1_00145
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
bbar01011
]
RHAL1_00145
Peptidases and inhibitors [BR:
bbar01002
]
Cysteine peptidases
Family C82
RHAL1_00145
Peptidoglycan biosynthesis and degradation proteins [BR:
bbar01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
RHAL1_00145
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
VVC53265
UniProt:
A0A5E4NPJ3
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All DBs
Position
1:150450..152471
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AA seq
673 aa
AA seq
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MRVRWLHATLSAAVLLASGATLARAQDIDLFANADPAATSNIPVKPDMPAAAAPAAPTPA
TVPMAKASLTIEPSDWSPGHAAPAQPQAETGKRGDGKTVSKLDDPDTVVKPAVPAPSQDP
LDTAKPAEPGKAPEPAAAQVVPLAPLPAAIKAALDKRGAAEIRGFEAVERRKERAAIAAY
YAARKYQPLWSGNGAAIAAVDPVLARLAKAGDDALGVADIPAKVVAKGTEDEVAWSEIAM
TEAVVAYSRQATGARVDPRVISPLIGARPQLADPAKVLDDVAAAGSAAGDRLAALNPVDP
RYAALRDRLASLHGARAPATTPIPAGPVLRIGMHDARVPLLRARLGVMALDLVADADEYD
MELAEAVSAYQRSNGLRVSGRLDTATAASLSGAGKGSSLEGALVANMEMWRWMPRDLGSD
RIEVDVPAYVVTVFHDGEPVATNRVVVGKPDTPTPIFSNTMKYAIVNPVWNVPQSIIKKE
MMAKIDRGGGLRGFEVSYNHGQLTVKQPSGPKNALGQIKFMFPNDFSVYLHDTPSKSLFS
ASKRAFSHGCVRVDQPFDFAFSVLNDGVPEGGKVVWSQKRLEKMIGDSERYVNLPKPLPI
HIMYFTATADAETGKVVQREDIYGYARAVTAALKGEARPAAAVVAERKPRRTAERPARAA
TARAAVATDEDPR
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtgcgttggctacacgcgaccttgtcggcggccgtgctcctcgcgagcggggcg
acgctggctcgggcgcaggacatcgatctcttcgcgaacgccgatccggcggcgacctcg
aacattccggtgaagccggacatgccggccgctgcagctccagccgcgccgacgcccgcc
accgtgcccatggcgaaggcgagcctgacgatcgagccttcggactggtctcccggccat
gccgcgccggcgcagccccaggcggagaccggcaagcgcggcgacggcaagaccgtatcg
aagctcgacgatccggatacggtcgtgaagccggccgtcccggcaccttcccaggatccg
ctggacacagccaagcccgcggagccgggcaaggcgcccgaacccgcggccgcgcaagtc
gtgccgctggcgccgctgccggcggcgatcaaggcggcgctcgacaagcgcggcgcggcc
gaaatccgcggcttcgaggccgtcgagcggcgcaaggagcgcgccgccatcgccgcctac
tacgcggcgcgcaagtaccagccgctttggtccgggaacggtgcagcgatcgccgcggtc
gacccggtgctggcgaggctcgccaaggccggcgacgacgcgctcggcgtcgccgacatc
ccggccaaggtggtcgccaagggaacggaggacgaggtcgcgtggagcgagatcgcgatg
acggaggcggtggtcgcctactcgcgccaggccaccggcgctcgcgtcgacccgcgggtc
atcagcccgctgatcggcgcgcgcccacagctcgccgaccccgccaaggtgctcgacgat
gtcgccgcagccggttcggcggccggggacaggctggccgccctcaaccccgtagatccg
cgatatgccgcgctacgcgacaggctcgcgtcgctgcatggcgcccgcgcgccagcgacg
acgccgatcccggcgggtccggtgctgcggatcggcatgcacgatgcccgggtgccgctg
ctgcgcgcccgcctcggcgtgatggcgctcgacctcgtggccgatgccgacgagtacgac
atggagctggcggaggcggtctcggcctaccagcgctccaacgggctgcgcgtctctggc
cgcctcgacaccgccaccgccgcctcgctgtcgggtgccggcaagggctcgtctctcgag
ggcgcgctcgtcgcgaacatggagatgtggcgctggatgccgcgcgacctcggcagcgac
cgcatcgaggtcgacgtgccggcctacgtcgtcaccgtcttccacgatggcgagccggtt
gcgacgaaccgcgtcgtggtcggcaagcccgacacgccgacgccgatcttctcgaacacg
atgaaatacgcaatcgtcaatccagtgtggaacgtgccgcagtccatcatcaagaaggag
atgatggcgaagatcgatcgcggtggcggcctgcgcggcttcgaggtgtcctacaaccac
ggccagctcacggtgaagcagccgtcggggccgaagaatgccctcggccagatcaagttc
atgttcccgaacgacttctcggtctatctgcacgacacgccgtcgaagtcgctgttctcg
gcgtcgaagcgggcgttcagccacggctgcgtgcgcgtcgaccagcccttcgacttcgcc
ttcagcgtgctgaacgacggggtgcccgagggcggcaaggtcgtgtggagccagaagcgg
ctcgagaagatgatcggcgacagcgagcgctacgtgaacctgccgaagccgctgccgatc
cacatcatgtacttcaccgcgaccgccgacgccgagaccggcaaggtggtgcagcgcgag
gatatctacggctacgcccgcgccgtcacggcggcgctcaagggggaggcgcggcccgcc
gccgccgttgttgccgagcgcaagccacgtcgcaccgcggagcggcccgcgcgcgccgcc
acggcacgggctgcggtcgcgaccgacgaagacccgcgctag
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