Beijerinckiaceae bacterium RH AL1: RHAL1_00495
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Entry
RHAL1_00495 CDS
T06029
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
bbar
Beijerinckiaceae bacterium RH AL1
Pathway
bbar02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bbar00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RHAL1_00495 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbar03021
]
RHAL1_00495 (rpoD)
Transcription machinery [BR:
bbar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RHAL1_00495 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Phage_DsbA
DUF4168
COG3_C
Motif
Other DBs
NCBI-ProteinID:
VVC53614
LinkDB
All DBs
Position
1:520826..522907
Genome browser
AA seq
693 aa
AA seq
DB search
MARAECEDAMAKKDNEKPENDGAVAENSDGPLLDLSDAAVKRMIKAAKKRGFVTYAELNA
VLPSEEVNSEQIEDILAMLNEMGINVVEAEEADDSETEEKEDEEEVDGGDLVEASQAKAV
TVRSSEPADRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQA
IIIWRDELNGSKVLLRDIIDLEATYAGPDGKNQPKIDMTAPGAQEALEAQRAQRAPATAP
VNPPAGLRPASEDGDANVPEESFDDDDDIENSVSLSAMEAELKPKVLDTFDRIADAYKKL
RKLQDQNVENKLKNEDLTPTQERRYKAFKKEVVADVKSLSLNQNRIDSLVEQLYTINRTL
IGHETRLLRLAEAHGVSREDFLKNYQNSELDPKWVLRVSKLGSRGWKDLIANAIDSVKEI
RGEIHNLATETGLEIAEFRKIVHMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQ
FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI
NKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLG
DFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQF
SVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
ttggcccgcgccgagtgcgaggacgcgatggcgaagaaggacaacgagaagccggagaac
gacggcgccgtcgccgagaatagcgacgggccgctgctcgacctttcggatgccgccgtc
aagcggatgatcaaggccgccaagaagcgcggcttcgtgacctatgccgagctcaacgcg
gtgctgccctccgaggaggtgaactccgagcagatcgaggacatcctcgccatgctcaac
gagatgggcatcaacgtcgtcgaggccgaggaggctgacgacagcgagaccgaggagaag
gaggacgaagaggaggtcgacggcggcgatctcgtcgaggcgtcgcaggcgaaggccgtc
accgtccgctcgtccgagccggccgaccgcaccgacgatcccgtgcgcatgtacctgcgc
gagatgggctcggtcgagctgctgtcgcgcgagggcgagatcgccatcgccaagcggatc
gaggcgggccgcgaggcgatgatcgccgggctctgcgagagcccgctgaccttccaggcc
atcatcatctggcgcgacgagctgaacggctcgaaggtgctgctgcgcgacatcatcgac
ctcgaggcgacctacgccggccccgacggcaagaaccagccgaagatcgacatgacggcc
cccggcgcgcaggaggcgctggaggcgcagcgcgcccagcgtgcgcccgccaccgcgccg
gtcaacccgccggcgggcctgcgcccggcctccgaggacggcgacgccaacgtgccggag
gaatcgttcgacgacgacgacgacatcgagaactcggtgtcgctgtcggccatggaggcg
gagctgaagccgaaggtgctcgacaccttcgaccgcatcgccgacgcctacaagaagctg
cgcaagctgcaggaccagaacgtcgagaacaagctcaagaacgaggatctcacgccgacg
caggagcgccgctacaaggcgttcaagaaggaagtcgtcgccgacgtgaagtcgctgtcg
ctgaaccagaaccgtatcgattcgctggtcgagcagctctacacgatcaaccgcacgctg
atcggccacgagacgcggcttctgcgcctcgccgaggcgcatggcgtgtcgcgcgaggac
tttctcaagaactaccagaactccgagctcgatccgaagtgggtgctgcgcgtctcgaag
ctcggctcgcgcggctggaaggacctgatcgccaacgccatcgacagcgtgaaggagatc
cgcggcgagatccacaacctcgcgaccgagacgggtctcgagatcgccgagttccgcaag
atcgtgcacatggtgcagaagggcgagcgcgaggcccggcaggcgaagaaggagatggtg
gaggcgaacctccgcctcgtgatctcgatcgccaagaagtacacgaaccgcggcctgcag
ttcctggacctgatccaggagggcaacatcggcctgatgaaggccgtcgacaagttcgag
taccgccgcggctacaagttctcgacctacgcgacgtggtggatccgccaggcgatcacc
cgcagcattgccgatcaagcaagaacgatccgcatcccggtgcacatgatcgagacgatc
aacaagatcgtgcgcacctcgcgccagatgctgcacgagatcggccgcgagccgacgccc
gaggagctggccgagaaactcgcgatgccgctcgagaaggtgcgcaaggttctcaagatc
gccaaggagccgatctcgctcgagacgccgatcggcgacgaggaggattcgcacctcggc
gacttcatcgaggacaagaacgcgatcctgccgatcgacgcggcgatccagtcgaacctg
cgcgagacgacgacgcgcgtgctggcctcgctgacgccgcgcgaggagcgcgtgctgcgc
atgcgcttcggcatcggcatgaacaccgaccacacgctggaagaagtcggccagcagttc
tcggtgacccgcgagcgcatccgccagattgaggcaaaggcgctgcgcaagctgaagcac
ccctcgcggagccggaagctgcgcagcttcctcgacaactga
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