Beijerinckiaceae bacterium RH AL1: RHAL1_00684
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Entry
RHAL1_00684 CDS
T06029
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bbar
Beijerinckiaceae bacterium RH AL1
Brite
KEGG Orthology (KO) [BR:
bbar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbar03032
]
RHAL1_00684
03400 DNA repair and recombination proteins [BR:
bbar03400
]
RHAL1_00684
Enzymes [BR:
bbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RHAL1_00684
DNA replication proteins [BR:
bbar03032
]
Prokaryotic type
DNA Topoisomerases
RHAL1_00684
DNA repair and recombination proteins [BR:
bbar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RHAL1_00684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
CFAP107
Motif
Other DBs
NCBI-ProteinID:
VVC53801
UniProt:
A0A5E4NUV8
LinkDB
All DBs
Position
1:711495..712676
Genome browser
AA seq
393 aa
AA seq
DB search
MAKGQGKAAGTRTRTAKPKAVARATEAVAQKIEACEEKGEACEEAAEAAGLVYVSDEDAG
ITRKRSGKGWRYIDPKGRTIRDYWERKRIDKIAVPPAYTDVWICPDPNGHIQATGRDDRG
RKQYRYHPKWTEARDTAKYERMVGFARLLPDIRARVAADMRRHGLPREKVAATLVALLEK
TLIRVGNEDYARENKSFGLTTLRNRHLEIDGSSLRFDFKGKSGKMWNLDLRDRRVAKVVR
SIQELPGQKLFQYLDDDGKRQPVSSSDVNAYLREITGEDVTAKDFRTWAGTVLASLALAE
FETVDSQSARKKNVKAAIESVAKRLGNTPTICRKCYVHPRVLDSYLDGTMLESIKQEVED
ELGDHAHKLRPEEAAVLGLLSRRIGRDLRARAQ
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagggcaaggcaaggcggctggcacgaggacgcggacggcgaagccgaaggcc
gtcgcccgcgcgacggaggccgtcgcccagaagatcgaggcctgcgaggagaagggcgag
gcctgcgaggaggcggccgaggccgccgggctcgtctacgtcagcgacgaggatgccggc
atcacccgaaagcgctcgggcaagggctggcgctacatcgatcccaagggccggacgatc
agggactactgggagcgcaagcgcatcgacaagatcgccgtgccgcccgcctacaccgac
gtctggatctgccccgaccccaacggccacatccaggcgacgggccgcgacgatcgcggc
cgcaagcagtaccgctaccaccccaagtggaccgaggcgcgcgacacggccaagtacgag
cggatggtcggcttcgcgcggctcctgccggacatccgcgcgcgcgtcgccgcagatatg
cgccgtcacgggctgccgcgcgagaaggtcgcggcgaccctcgtcgcgcttctcgagaag
acgctgatccgcgtcggcaacgaggattatgccagggagaacaagagcttcggcctgacc
accctgcgcaacaggcacctcgagatcgacggctcgagcctgcgcttcgacttcaagggc
aagagcggcaagatgtggaacctcgacctgcgcgaccgccgcgtggcgaaggtcgtccgc
tcgatccaggagcttccgggccagaagctgttccagtacctcgacgacgacggcaagcgt
cagccggtctcctcgtccgacgtcaacgcatacctccgcgagatcaccggcgaggacgtc
accgccaaggattttcggacctgggccggcaccgtgctggcctcgctggccctcgccgag
ttcgagacggtcgacagccagtccgctcgcaagaagaacgtcaaggcggcgatcgagagc
gtcgccaagcggctcggcaacacgccgacgatctgccgcaagtgctacgtccacccgcgc
gtgctcgattcctacctcgacggcacgatgctcgagagcatcaagcaggaggtcgaggac
gagctcggcgaccatgcccacaagctgcgcccggaggaggcggcggtgctcggcctgctg
agccgccgcatcggccgcgacctcagggcaagggcgcaatga
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