Beijerinckiaceae bacterium RH AL1: RHAL1_01999
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Entry
RHAL1_01999 CDS
T06029
Name
(GenBank) Single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bbar
Beijerinckiaceae bacterium RH AL1
Pathway
bbar03410
Base excision repair
bbar03430
Mismatch repair
bbar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHAL1_01999
03430 Mismatch repair
RHAL1_01999
03440 Homologous recombination
RHAL1_01999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbar03400
]
RHAL1_01999
DNA repair and recombination proteins [BR:
bbar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RHAL1_01999
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RHAL1_01999
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHAL1_01999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF4340
Motif
Other DBs
NCBI-ProteinID:
VVC55086
UniProt:
A0A5E4NYH9
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All DBs
Position
1:complement(2014432..2016240)
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AA seq
602 aa
AA seq
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MTPVLGVTRSLRGRPWATRLDTAGEALALAIAQLGGLGDIPSRILAARGIAPDTVAAYLD
PAVRDLMPDPSTLVDMDRAVARLADAVERRETIAIFGDYDVDGAASSALLADYLAALGVS
HMIHIPDRLFEGYGPNVEAVRLLSQRGAKLLVAVDCGTTSPAALAEAQALGLDPIVLDHH
QAPERLPDAIVVNPNRLDDLSGLGQLCAAGVVLMALVGLQRALRARGFFGAQAAPDLLAA
LDLVALATVADVAPLTGLNRAFVKKGLAVMRARGRPGLRALLDVAAAVGAPTTYHLGYLV
GPRINAGGRIGDAALGARLLTLSDDDEADAIAAQLDTLNRERQAMELATLEVAEAEALAQ
VGLDDAGAAVVVTAGEGWHPGIVGIIAGRLREKFGRPAFAISLPEGARHSRGPGGGTGSG
RSIPGVDLGRAVRAAVEAGVLVKGGGHAMAAGVTLGAGGVSAFRAFIEAELAAAATAARE
ADSLAIDATLTAAGATPALVAELERAGPFGSGSPEPVFAFPAHRIADVAPVGKDHVRLRV
QAGDGASIDAICFRAADEPLGKALLAARGEKLHLAGTLAVDRWGGRERVQLRLLDAARPS
GG
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgacccccgtcctcggcgtcacccgctcgctgcggggacggccgtgggcgacccgcctc
gacacggcgggcgaggcgctggcccttgccatcgcccagctcggcggcctcggcgacatc
ccctcgcgcatcctcgcggcgcgcggcatcgccccagacaccgtcgccgcctacctagat
cccgccgtgcgcgacctgatgccggacccctcgacccttgtcgacatggaccgtgccgtc
gcgcggctcgccgacgccgtcgagcggcgcgagaccatcgcgatcttcggcgactacgac
gtcgacggcgccgcctcctccgcactcctggccgactatctcgcggcgctcggcgtgtcg
cacatgatccacattccggatcgcctcttcgagggctacggccccaacgtcgaggcggtg
cgtctcctctcgcagcgcggcgcgaagctcctcgtcgccgtcgactgcggcaccacgagc
cctgccgcgctcgccgaggcgcaagcgctcgggctcgacccgatcgtcctcgaccaccac
caggcgccggagcgcctgcccgacgcgatcgtcgtcaacccgaaccggctcgacgacctc
tccggtctcggccagctctgcgccgccggcgtggtgctgatggcgctggttggcctgcag
cgggcgttgcgcgcgcgcggcttcttcggagcgcaggcggcgcccgaccttctcgccgcg
ctcgacctcgtcgcgctggcgaccgtggccgacgtcgcgccgctcaccgggctcaaccgc
gctttcgtcaagaaagggctcgcggtcatgcgcgcccgcggccgccccggcctgcgcgcg
ctgctcgacgtcgccgccgcggtcggcgcgccgacgacctaccatctcggctatctcgtc
gggccgcgcatcaacgcggggggccgcatcggcgacgccgcgctcggggcgcggctgctt
acgctttcagacgacgacgaagccgacgccatcgccgcccagctcgacacgctcaaccgc
gagcgacaggcgatggagctggcaacgctggaggtggccgaggcggaagcgttggcgcag
gtcggacttgacgatgccggtgccgccgtcgtggtgacggccggcgagggctggcatccc
ggcatcgtcggcatcattgccgggcgcctgcgcgaaaagttcggccgcccggcgttcgcc
atctcgctcccggagggtgcgcggcacagcagaggtccagggggtggcaccggctccggg
cgctcgatccccggcgtcgacctcgggcgcgcggtgcgcgccgcggtcgaggccggcgtg
ctcgtgaagggcggcggccatgccatggccgccggcgtcacgctcggcgcgggcggcgtc
agcgccttccgcgccttcatcgaagcggagcttgcagccgcggcgaccgccgcgcgcgaa
gccgattcgctcgccatcgacgcgacgttgacggcagcaggcgccaccccggcgctggtg
gccgagctcgagcgggcagggccgttcggctcgggcagcccagaacctgtcttcgccttc
ccggcgcatcgcatcgccgatgtcgcgccggtcggcaaagatcacgtgcgcctgcgcgtg
caagccggcgatggcgcctcgatcgacgcgatctgctttcgcgccgccgacgagccgctc
ggcaaggcgctgctcgcggcgcgcggcgagaagctgcatctcgccggcacgctcgccgtc
gaccgctggggcgggcgcgagcgcgtgcagttgcgcctgctcgatgcagcgcgcccgagc
gggggttaa
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